BLASTX nr result

ID: Panax21_contig00015277 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015277
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containin...    89   4e-16
ref|XP_002520438.1| RNA binding motif protein, putative [Ricinus...    79   5e-13
ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containin...    75   6e-12
ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|2...    73   2e-11
ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|2...    73   2e-11

>ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
           [Vitis vinifera]
          Length = 474

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 38/48 (79%), Positives = 43/48 (89%)
 Frame = -1

Query: 370 QIVQPPGNQDQAPQPMHYFNIPPPPPLQERTYYPSMDPQRMGAVIPSQ 227
           Q++QPPG QDQ P PMHYFNIPPPP  QERT+YPSMDPQRMGA++PSQ
Sbjct: 337 QVIQPPGTQDQPPPPMHYFNIPPPPQ-QERTFYPSMDPQRMGALVPSQ 383


>ref|XP_002520438.1| RNA binding motif protein, putative [Ricinus communis]
           gi|223540280|gb|EEF41851.1| RNA binding motif protein,
           putative [Ricinus communis]
          Length = 285

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 37/46 (80%), Positives = 39/46 (84%)
 Frame = -1

Query: 364 VQPPGNQDQAPQPMHYFNIPPPPPLQERTYYPSMDPQRMGAVIPSQ 227
           + P G QDQ P PMHYFNIPPPP  QERTYYPSMDPQRMGAV+PSQ
Sbjct: 156 LHPAGTQDQPP-PMHYFNIPPPPQ-QERTYYPSMDPQRMGAVVPSQ 199


>ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
           [Cucumis sativus] gi|449525922|ref|XP_004169965.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           40-like [Cucumis sativus]
          Length = 517

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 32/43 (74%), Positives = 36/43 (83%)
 Frame = -1

Query: 364 VQPPGNQDQAPQPMHYFNIPPPPPLQERTYYPSMDPQRMGAVI 236
           + PPG  DQ PQ MHYFNIPPPPP QER +YPSMDPQRMGA++
Sbjct: 337 LHPPGTHDQ-PQAMHYFNIPPPPPQQERAFYPSMDPQRMGALV 378


>ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|222850537|gb|EEE88084.1|
           predicted protein [Populus trichocarpa]
          Length = 531

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = -1

Query: 364 VQPPGNQDQAPQPMHYFNIPPPPPLQERTYYPSMDPQRMGAVIPSQ 227
           + PPG QDQ P PMHYFNIPPPP  QER +YPSMDPQRMGA++ SQ
Sbjct: 338 LNPPGTQDQHP-PMHYFNIPPPPQ-QERAFYPSMDPQRMGALVGSQ 381


>ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|222850535|gb|EEE88082.1|
           predicted protein [Populus trichocarpa]
          Length = 531

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = -1

Query: 364 VQPPGNQDQAPQPMHYFNIPPPPPLQERTYYPSMDPQRMGAVIPSQ 227
           + PPG QDQ P PMHYFNIPPPP  QER +YPSMDPQRMGA++ SQ
Sbjct: 338 LNPPGTQDQHP-PMHYFNIPPPPQ-QERAFYPSMDPQRMGALVGSQ 381


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