BLASTX nr result

ID: Panax21_contig00015129 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015129
         (595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510162.1| conserved hypothetical protein [Ricinus comm...   124   9e-29
ref|XP_002283006.1| PREDICTED: protein DCL, chloroplastic [Vitis...   129   3e-28
ref|XP_004141276.1| PREDICTED: protein DCL, chloroplastic-like [...   126   3e-27
ref|XP_002877497.1| hypothetical protein ARALYDRAFT_905861 [Arab...   119   5e-25
ref|XP_003523609.1| PREDICTED: protein DCL, chloroplastic-like [...   118   7e-25

>ref|XP_002510162.1| conserved hypothetical protein [Ricinus communis]
           gi|223550863|gb|EEF52349.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 234

 Score =  124 bits (310), Expect(2) = 9e-29
 Identities = 61/96 (63%), Positives = 69/96 (71%)
 Frame = -2

Query: 288 EPPSYPRIDDPDFRXXXXXXXXXXXXXXXIALLVKEILHSRRYIDGEILTIEDEKIVVEK 109
           EP  YPR DDPD+                I  L KEILHS RY+DGE LT EDEK +VEK
Sbjct: 100 EPTKYPRWDDPDYCKWRNKEEEIMNDIQSITALAKEILHSDRYLDGERLTDEDEKAIVEK 159

Query: 108 LLAYHPHAEDKIGCGLDSIMVDQHPQFRQSRCLFVI 1
           LLA+HP++EDKIGCGLDSIMVD+HPQFR SRCLFV+
Sbjct: 160 LLAHHPNSEDKIGCGLDSIMVDRHPQFRHSRCLFVV 195



 Score = 28.5 bits (62), Expect(2) = 9e-29
 Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -1

Query: 373 RRPWSTSAELTQPDENLSSA-VNTSV 299
           RRPWS++A+ T+ DE  SSA  NT+V
Sbjct: 70  RRPWSSAADSTRLDEEGSSADKNTAV 95


>ref|XP_002283006.1| PREDICTED: protein DCL, chloroplastic [Vitis vinifera]
           gi|302142270|emb|CBI19473.3| unnamed protein product
           [Vitis vinifera]
          Length = 194

 Score =  129 bits (325), Expect = 3e-28
 Identities = 63/98 (64%), Positives = 71/98 (72%)
 Frame = -2

Query: 294 AKEPPSYPRIDDPDFRXXXXXXXXXXXXXXXIALLVKEILHSRRYIDGEILTIEDEKIVV 115
           +++P +YPR DDPDFR               I  L KEILHS RY+DGE LT EDEK VV
Sbjct: 57  SRDPANYPRWDDPDFRKWKNREEEILRDIEPITSLTKEILHSDRYMDGERLTAEDEKAVV 116

Query: 114 EKLLAYHPHAEDKIGCGLDSIMVDQHPQFRQSRCLFVI 1
           EKLL YHPH+EDKIGCGLD IMVD+HPQFR SRCLFV+
Sbjct: 117 EKLLIYHPHSEDKIGCGLDCIMVDRHPQFRHSRCLFVV 154


>ref|XP_004141276.1| PREDICTED: protein DCL, chloroplastic-like [Cucumis sativus]
          Length = 196

 Score =  126 bits (316), Expect = 3e-27
 Identities = 61/96 (63%), Positives = 70/96 (72%)
 Frame = -2

Query: 288 EPPSYPRIDDPDFRXXXXXXXXXXXXXXXIALLVKEILHSRRYIDGEILTIEDEKIVVEK 109
           EPP Y R D+PD+R               I  L KEILHS RY DGE LT+EDE+ VV++
Sbjct: 62  EPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDR 121

Query: 108 LLAYHPHAEDKIGCGLDSIMVDQHPQFRQSRCLFVI 1
           LLA+HPHAEDKIGCGL+SIMVD+HPQFRQSRC FVI
Sbjct: 122 LLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVI 157


>ref|XP_002877497.1| hypothetical protein ARALYDRAFT_905861 [Arabidopsis lyrata subsp.
           lyrata] gi|297323335|gb|EFH53756.1| hypothetical protein
           ARALYDRAFT_905861 [Arabidopsis lyrata subsp. lyrata]
          Length = 203

 Score =  119 bits (297), Expect = 5e-25
 Identities = 58/90 (64%), Positives = 67/90 (74%)
 Frame = -2

Query: 270 RIDDPDFRXXXXXXXXXXXXXXXIALLVKEILHSRRYIDGEILTIEDEKIVVEKLLAYHP 91
           R +DPD+R               IALL KEILHS RY+DGE L  EDEKIV+EKLLAYHP
Sbjct: 74  RFEDPDYRKWKNLEAEILRDIEPIALLAKEILHSDRYLDGERLEFEDEKIVMEKLLAYHP 133

Query: 90  HAEDKIGCGLDSIMVDQHPQFRQSRCLFVI 1
           +++DKIGCGLD IMVD+HPQFR SRCLFV+
Sbjct: 134 YSKDKIGCGLDFIMVDRHPQFRHSRCLFVV 163


>ref|XP_003523609.1| PREDICTED: protein DCL, chloroplastic-like [Glycine max]
          Length = 203

 Score =  118 bits (296), Expect = 7e-25
 Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
 Frame = -2

Query: 294 AKEPPSYPRI--DDPDFRXXXXXXXXXXXXXXXIALLVKEILHSRRYIDGEILTIEDEKI 121
           A+ PPS      DDPD+R               I +L K+ILHSRRY+DG  L  EDEK 
Sbjct: 64  AQYPPSSEARWEDDPDYRKWKDKEKEILSDIEPIVVLAKDILHSRRYMDGARLNEEDEKA 123

Query: 120 VVEKLLAYHPHAEDKIGCGLDSIMVDQHPQFRQSRCLFVI 1
           +VEKLLAYHPH+EDKIGCGL+SIMVD+HPQ+RQSRCLFV+
Sbjct: 124 IVEKLLAYHPHSEDKIGCGLESIMVDRHPQYRQSRCLFVV 163


Top