BLASTX nr result

ID: Panax21_contig00014863 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014863
         (888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316133.1| predicted protein [Populus trichocarpa] gi|1...   221   2e-55
ref|XP_002273461.1| PREDICTED: E3 ubiquitin-protein ligase RING1...   218   1e-54
ref|XP_002522447.1| zinc finger protein, putative [Ricinus commu...   211   2e-52
ref|XP_002311305.1| predicted protein [Populus trichocarpa] gi|2...   208   2e-51
gb|ABK96350.1| unknown [Populus trichocarpa x Populus deltoides]      208   2e-51

>ref|XP_002316133.1| predicted protein [Populus trichocarpa] gi|118483434|gb|ABK93617.1|
           unknown [Populus trichocarpa]
           gi|222865173|gb|EEF02304.1| predicted protein [Populus
           trichocarpa]
          Length = 218

 Score =  221 bits (562), Expect = 2e-55
 Identities = 120/219 (54%), Positives = 149/219 (68%), Gaps = 5/219 (2%)
 Frame = -2

Query: 809 SDQTEMPQPQPSFVERLINSRNMDLSVFLPIILGLT--NNPSSTHPDQDSSERGDPRDRI 636
           + +TE P    S  ERL+  R+ DLS+FLP ILG T  N      PDQ++ +  DP +RI
Sbjct: 2   ASETEFPAEFSSMFERLL--RHRDLSLFLPFILGFTSTNTTEQRDPDQEAPQTTDPNERI 59

Query: 635 ILINPLTQGMVVIEGSSSGMDSLLRDLLSKDGQPPASKASIEAMPSVEAKEGD---ECVI 465
           ILINP TQGMVVIEG++S ++SLLRD+ +K GQPPASKASIEAMP VE  E +   EC I
Sbjct: 60  ILINPFTQGMVVIEGAAS-LESLLRDIGNKKGQPPASKASIEAMPKVEIGEDNKDGECAI 118

Query: 464 CLEELRGIGDLAKEMPCKHSFHGECIEKWLKIHGSCPVCRYKMPVDDDQDVNKKSVFXXX 285
           CLEE   +G + KEMPCKH FHG C+EKWLKIHG+CPVCRYKMPVD+++   K+      
Sbjct: 119 CLEEWE-LGGVVKEMPCKHRFHGGCVEKWLKIHGNCPVCRYKMPVDEEELGKKRDEGDGG 177

Query: 284 XXXXXXXEIWVSFSFSNSDRRSGDTNQTAYHDSPGPDNE 168
                  EIWVSF+F N  RR+GD+N+   +DS   D E
Sbjct: 178 RERRVEREIWVSFAF-NGSRRNGDSNENPSNDSSTEDQE 215


>ref|XP_002273461.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera]
          Length = 233

 Score =  218 bits (556), Expect = 1e-54
 Identities = 126/219 (57%), Positives = 153/219 (69%), Gaps = 15/219 (6%)
 Frame = -2

Query: 776 SFVERLINSRNMDLSVFLPIILGLTNNPS---STHPDQDSSERGDPRDRIILINPLTQGM 606
           SF+ERLI+SRN DLS+F+P ILG T+  +   S  PD ++++   PRDRIILINP TQGM
Sbjct: 15  SFLERLISSRNRDLSMFIPFILGFTDTTTRQESDDPDDETTDTPTPRDRIILINPFTQGM 74

Query: 605 VVIEGSSSGMDSLLRDLLSKDGQPPASKASIEAMPSVEAKEGD-ECVICLEELRGIGDLA 429
           +VIEG+SS  DSLLR+L SK GQPPA+KASIEAMPSVE    D ECVICLEE + +G +A
Sbjct: 75  IVIEGNSS-FDSLLRELASKGGQPPATKASIEAMPSVEVGGDDGECVICLEEWK-VGCVA 132

Query: 428 KEMPCKHSFHGECIEKWLKIHGSCPVCRYKMPVDDDQDVNKK-----SVFXXXXXXXXXX 264
           KEMPCKH FH  CI KWL IHGSCPVCR+KMPV D++D+ KK                  
Sbjct: 133 KEMPCKHKFHENCIVKWLGIHGSCPVCRHKMPV-DEEDLGKKREGSVGDEEGRGRRRVER 191

Query: 263 EIWVSFSFSNSDRR--SGDTNQTAYHD----SPGPDNEM 165
           EIWVSFSF+++ RR  S  T  TA H+    SP PD+ +
Sbjct: 192 EIWVSFSFNSNSRRNDSNQTPSTASHNDSSSSPTPDDHV 230


>ref|XP_002522447.1| zinc finger protein, putative [Ricinus communis]
           gi|223538332|gb|EEF39939.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 233

 Score =  211 bits (537), Expect = 2e-52
 Identities = 124/236 (52%), Positives = 159/236 (67%), Gaps = 19/236 (8%)
 Frame = -2

Query: 809 SDQTEMPQPQPSFVERLINSRNMDLSVFLPIILGLTNNPSSTH---PDQDSSERGDPRDR 639
           + +T++P+   +F ER +  R+ DLS+FLP ILG T+  ++T+   PDQ++ E     +R
Sbjct: 2   ASETQVPELSSAF-ERFL--RHRDLSLFLPFILGFTSTTTNTNTENPDQENQETTSRHER 58

Query: 638 IILINPLTQGMVVIEGSSSGMDSLLRDLLSKDGQPPASKASIEAMPSVEAKE-GD---EC 471
           IILINP TQGMVVIEG+ S +DSLLR+L +K+G PPAS+ASIE++PSV+ +E GD   EC
Sbjct: 59  IILINPFTQGMVVIEGTES-LDSLLRELAAKNGHPPASRASIESLPSVDVQEIGDRDSEC 117

Query: 470 VICLEELR-GIGDLAKEMPCKHSFHGECIEKWLKIHGSCPVCRYKMPVDDDQDVNKKS-V 297
            ICLEE   G G + KEMPCKH FHG CIEKWL IHGSCPVCRYKMPVDD++   K+   
Sbjct: 118 AICLEEWEIGAGAVVKEMPCKHRFHGNCIEKWLGIHGSCPVCRYKMPVDDEELSKKRDHE 177

Query: 296 FXXXXXXXXXXEIWVSFSF--SNSDRRSGDTNQTAYHDS--------PGPDNEM*G 159
                      EIWVSFSF  S+S+RR+ D+NQT   +S        P PD E  G
Sbjct: 178 EEGEGGRERRREIWVSFSFNSSSSNRRNDDSNQTPSSESNDVDDNSTPSPDQEREG 233


>ref|XP_002311305.1| predicted protein [Populus trichocarpa] gi|222851125|gb|EEE88672.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score =  208 bits (529), Expect = 2e-51
 Identities = 117/213 (54%), Positives = 147/213 (69%), Gaps = 5/213 (2%)
 Frame = -2

Query: 809 SDQTEMPQPQPSFVERLINSRNMDLSVFLPIILGLTNNPSSTHPDQDSS-ERGDPRDRII 633
           + +TE+P    S  ERL+  R+ DLS+FLP I G T+  S+   D D   +  DP +RII
Sbjct: 2   ASETELPAELSSMFERLL--RHRDLSLFLPFIFGFTSTNSTEERDPDQEPQTTDPNERII 59

Query: 632 LINPLTQGMVVIEGSSSGMDSLLRDLLSKDGQPPASKASIEAMPSVEAKEGD---ECVIC 462
           LINPLTQGMVVIEG++S ++SLLRD+ +K+GQPPASKASIEAMPSVE  E +   EC IC
Sbjct: 60  LINPLTQGMVVIEGAAS-LESLLRDIGNKNGQPPASKASIEAMPSVEIGEDNKDGECAIC 118

Query: 461 LEELRGIGDLAKEMPCKHSFHGECIEKWLKIHGSCPVCRYKMPVDDDQDVNKK-SVFXXX 285
           LEE    G + KEMPCKH FHG C+EKWLKIHG+CPVCRYKMPVD+++   K+       
Sbjct: 119 LEEWEP-GAVVKEMPCKHRFHGNCVEKWLKIHGNCPVCRYKMPVDEEELGKKRDGGDGGR 177

Query: 284 XXXXXXXEIWVSFSFSNSDRRSGDTNQTAYHDS 186
                  EIWVSF+F N +RR+ D+N+    DS
Sbjct: 178 EWRRAEREIWVSFAF-NGNRRNRDSNENPSSDS 209


>gb|ABK96350.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 225

 Score =  208 bits (529), Expect = 2e-51
 Identities = 117/213 (54%), Positives = 147/213 (69%), Gaps = 5/213 (2%)
 Frame = -2

Query: 809 SDQTEMPQPQPSFVERLINSRNMDLSVFLPIILGLTNNPSSTHPDQDSS-ERGDPRDRII 633
           + +TE+P    S  ERL+  R+ DLS+FLP I G T+  S+   D D   +  DP +RII
Sbjct: 2   ASETELPAELSSMFERLL--RHRDLSLFLPFIFGFTSTNSTEERDPDQEPQTTDPNERII 59

Query: 632 LINPLTQGMVVIEGSSSGMDSLLRDLLSKDGQPPASKASIEAMPSVEAKEGD---ECVIC 462
           LINPLTQGMVVIEG++S ++SLLRD+ +K+GQPPASKASIEAMPSVE  E +   EC IC
Sbjct: 60  LINPLTQGMVVIEGAAS-LESLLRDMGNKNGQPPASKASIEAMPSVEIGEDNKDGECAIC 118

Query: 461 LEELRGIGDLAKEMPCKHSFHGECIEKWLKIHGSCPVCRYKMPVDDDQDVNKK-SVFXXX 285
           LEE    G + KEMPCKH FHG C+EKWLKIHG+CPVCRYKMPVD+++   K+       
Sbjct: 119 LEEWEP-GAVVKEMPCKHRFHGNCVEKWLKIHGNCPVCRYKMPVDEEELGKKRDGGDGGR 177

Query: 284 XXXXXXXEIWVSFSFSNSDRRSGDTNQTAYHDS 186
                  EIWVSF+F N +RR+ D+N+    DS
Sbjct: 178 EWRRAEREIWVSFAF-NGNRRNRDSNENPSSDS 209


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