BLASTX nr result

ID: Panax21_contig00014678 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014678
         (931 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003590703.1| Pre-mRNA-processing factor [Medicago truncat...    77   6e-12
ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|2...    76   1e-11
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro...    76   1e-11
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik...    76   1e-11
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]     76   1e-11

>ref|XP_003590703.1| Pre-mRNA-processing factor [Medicago truncatula]
           gi|355479751|gb|AES60954.1| Pre-mRNA-processing factor
           [Medicago truncatula]
          Length = 583

 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +3

Query: 87  VARDVCQVNFSPEGWLVKSRDCEGKCWFYD*KDCKVF-----YPSSPLGCKWRPAEQGKV 251
           VA   CQVNFSP+G  V S D EGKCWF+D K CKVF     +    +GC+W P EQ KV
Sbjct: 512 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVTIGCEWHPLEQSKV 571

Query: 252 SCYRSDDLI*YW 287
           +    D LI YW
Sbjct: 572 ATCGWDGLIKYW 583


>ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|222852429|gb|EEE89976.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +3

Query: 87  VARDVCQVNFSPEGWLVKSRDCEGKCWFYD*KDCKVF-----YPSSPLGCKWRPAEQGKV 251
           VA   CQVNFSP+G  V S D EGKCWF+D K CKVF     +    +GC+W P EQ KV
Sbjct: 509 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 568

Query: 252 SCYRSDDLI*YW 287
           +    D LI YW
Sbjct: 569 ATCGWDGLIKYW 580


>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
           [Cucumis sativus]
          Length = 580

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +3

Query: 87  VARDVCQVNFSPEGWLVKSRDCEGKCWFYD*KDCKVF-----YPSSPLGCKWRPAEQGKV 251
           VA   CQVNFSP+G  V S D EGKCWF+D K CKVF     +    +GC+W P EQ KV
Sbjct: 509 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKV 568

Query: 252 SCYRSDDLI*YW 287
           +    D LI YW
Sbjct: 569 ATCGWDGLIKYW 580


>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
          Length = 580

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +3

Query: 87  VARDVCQVNFSPEGWLVKSRDCEGKCWFYD*KDCKVF-----YPSSPLGCKWRPAEQGKV 251
           VA   CQVNFSP+G  V S D EGKCWF+D K CKVF     +    +GC+W P EQ KV
Sbjct: 509 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKV 568

Query: 252 SCYRSDDLI*YW 287
           +    D LI YW
Sbjct: 569 ATCGWDGLIKYW 580


>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
          Length = 581

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +3

Query: 87  VARDVCQVNFSPEGWLVKSRDCEGKCWFYD*KDCKVF-----YPSSPLGCKWRPAEQGKV 251
           VA   CQVNFSP+G  V S D EGKCWF+D K CKVF     +    +GC+W P EQ KV
Sbjct: 509 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKV 568

Query: 252 SCYRSDDLI*YW 287
           +    D LI YW
Sbjct: 569 ATCGWDGLIKYW 580


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