BLASTX nr result

ID: Panax21_contig00014604 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014604
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69883.1| hypothetical protein VITISV_031889 [Vitis vinifera]    84   1e-14
ref|XP_002332416.1| predicted protein [Populus trichocarpa] gi|2...    65   7e-09
ref|XP_002303898.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_004143613.1| PREDICTED: zinc finger CCCH domain-containin...    60   2e-07
ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containin...    57   2e-06

>emb|CAN69883.1| hypothetical protein VITISV_031889 [Vitis vinifera]
          Length = 682

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 63/145 (43%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
 Frame = +1

Query: 1   SASSRLLN--GINRPSPLRIPNPXXXXXXXXXXXNFSEFPQTPDDLISPNSGPNHY-NVN 171
           S SSRLL   G+N PSPL IPNP            FS+F Q  DDLISPNSG   Y N N
Sbjct: 96  STSSRLLGAGGLNLPSPLAIPNPSSSASSFSV---FSDF-QPQDDLISPNSGAIPYTNSN 151

Query: 172 VVSNLGIGCXXXXXXXXXAPPFYGKGEIETDLIDEFQLQDQLSFLNDGL-----KSTDFY 336
            ++ + +G          +P FYG      DLIDEFQLQDQLSFLNDG      K+ D +
Sbjct: 152 GINGVAVGSSSSAMNSSSSP-FYGGN----DLIDEFQLQDQLSFLNDGSPTLGPKNPDLF 206

Query: 337 YPQPDXXXXXXXXXXXXXXXFNSYG 411
           Y Q +               F SYG
Sbjct: 207 YSQQELASSPGGGSGGDAMGFPSYG 231


>ref|XP_002332416.1| predicted protein [Populus trichocarpa] gi|222832369|gb|EEE70846.1|
           predicted protein [Populus trichocarpa]
          Length = 598

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 52/125 (41%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
 Frame = +1

Query: 1   SASSRLLNGINRPSPLRIPNPXXXXXXXXXXXNFSEFPQTPDDLISPNSGPNHYNVNVVS 180
           S++SRL  G N P  L IPNP           ++S+ P  PDDLISPN      ++N  S
Sbjct: 94  SSTSRL--GFNIPPSLTIPNPSSNFSS-----SWSDLPN-PDDLISPNGS----SLNPAS 141

Query: 181 NLGIGCXXXXXXXXXAPPFYG---KGEIETDLIDEFQLQDQLSFLND-----GLKSTDFY 336
                            PFY    +G  E+DL+DEFQLQDQLSFLND     G KS+D +
Sbjct: 142 ----------------APFYANGVRGGGESDLMDEFQLQDQLSFLNDNSANLGPKSSDLF 185

Query: 337 YPQPD 351
           Y Q D
Sbjct: 186 YSQLD 190


>ref|XP_002303898.1| predicted protein [Populus trichocarpa] gi|222841330|gb|EEE78877.1|
           predicted protein [Populus trichocarpa]
          Length = 680

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 50/124 (40%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
 Frame = +1

Query: 1   SASSRLLNGINRPSPLRIPNPXXXXXXXXXXXNFSEFPQTPDDLISPNSGPNHYNVNVVS 180
           S++SRL  G N P  L IPNP           ++S+ P   D +ISPN      ++N  S
Sbjct: 68  SSTSRL--GFNIPPSLAIPNPSSNNSS-----SWSDLPNPDDLMISPNDS----SLNPAS 116

Query: 181 NLGIGCXXXXXXXXXAPPFYGKGEI--ETDLIDEFQLQDQLSFLND-----GLKSTDFYY 339
                            PFY  G    E+DL+DEFQLQDQLSFLND     G KS+D +Y
Sbjct: 117 ----------------VPFYANGVRGGESDLMDEFQLQDQLSFLNDNSQNLGPKSSDLFY 160

Query: 340 PQPD 351
           PQ D
Sbjct: 161 PQLD 164


>ref|XP_004143613.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Cucumis sativus]
          Length = 733

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 50/143 (34%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
 Frame = +1

Query: 1   SASSRLLNGINRPSPLRIPNPXXXXXXXXXXXNFSEFPQTPDDLISPNSGPNHYNVNVVS 180
           S+SSRL  GI+ P  L IP+P             S+   + D LISP + P         
Sbjct: 96  SSSSRL--GISLPLSLTIPSPSSSSSVSWAAGFSSDLQTSDDHLISPGNLP--------- 144

Query: 181 NLGIGCXXXXXXXXXAPPFYGKGEIETDLIDEFQLQDQLSFLND-----GLKSTDFYYPQ 345
            LG  C            F   G   +D+IDEFQLQDQLSFLND     G+K+ D ++P 
Sbjct: 145 -LGSSC------------FAAGGAPASDMIDEFQLQDQLSFLNDGSPTIGVKNADLFFPP 191

Query: 346 PDXXXXXXXXXXXXXXXFNSYGG 414
            D               F SYGG
Sbjct: 192 AD------LSSSPTGGGFGSYGG 208


>ref|XP_003539907.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Glycine max]
          Length = 704

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 48/122 (39%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
 Frame = +1

Query: 7   SSRLLNGINRPSPLRIPNPXXXXXXXXXXXNFSEFPQTPDDLISPNSGPNHYNV-NVVSN 183
           +S  L+G N P  L IPNP             SE  QTPDDL+SPN    H  V +  S+
Sbjct: 88  TSSRLSGTNIPPALTIPNPSSWP-------TMSEL-QTPDDLMSPN----HLVVGSSTSS 135

Query: 184 LGIGCXXXXXXXXXAPPFYGKGEIETDLIDEFQLQDQLSFLNDGLKST---------DFY 336
           L +             PFY  G   +D IDEFQLQDQL+FLNDG  ++         D +
Sbjct: 136 LSL-------------PFYANGG--SDPIDEFQLQDQLAFLNDGSPTSTALSHKNNPDMF 180

Query: 337 YP 342
           YP
Sbjct: 181 YP 182


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