BLASTX nr result

ID: Panax21_contig00014597 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014597
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...    90   2e-16
emb|CBI35920.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...    79   3e-13
ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subs...    75   4e-12
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12

>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 48/99 (48%), Positives = 64/99 (64%)
 Frame = +1

Query: 139 KNVKKKDTIDVKILTLREKSDKTSPLVGYFPTGFDPLKNGPMEAEASGPPEHSXXXXXXX 318
           K  KKK  ++VK+  + E  +K  PLVGYFP+GFDP K  P + E+  PP  +       
Sbjct: 19  KKRKKKKHVNVKMEVVHEHPEKIPPLVGYFPSGFDPHK--PQDHESDPPP--AVKVFRNK 74

Query: 319 XXXXXLQVVVTPNGSQVDFVGTNYSGEGAAPQLCTYALG 435
                LQ+VV+PN S+V+FVGT+YSGE A+ Q+CTYALG
Sbjct: 75  ARANRLQLVVSPNDSKVNFVGTSYSGEAASAQVCTYALG 113


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 42/84 (50%), Positives = 55/84 (65%)
 Frame = +1

Query: 184 LREKSDKTSPLVGYFPTGFDPLKNGPMEAEASGPPEHSXXXXXXXXXXXXLQVVVTPNGS 363
           + E  +K  PLVGYFP+GFDP K  P + E+  PP  +            LQ+VV+PN S
Sbjct: 4   VHEHPEKIPPLVGYFPSGFDPHK--PQDHESDPPP--AVKVFRNKARANRLQLVVSPNDS 59

Query: 364 QVDFVGTNYSGEGAAPQLCTYALG 435
           +V+FVGT+YSGE A+ Q+CTYALG
Sbjct: 60  KVNFVGTSYSGEAASAQVCTYALG 83


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
           gi|449480549|ref|XP_004155927.1| PREDICTED:
           uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
 Frame = +1

Query: 130 ESQKNVKKKDTIDVKILTLREKSDKTSPLVGYFPTGFDPLKNGPMEAEASGPPEHSXXXX 309
           +S+K  K+  ++D KI  L  +  KT P+VGYFP+GFDP K+   E   S          
Sbjct: 30  KSEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRS----VRARVY 85

Query: 310 XXXXXXXXLQVVVTPNGSQVDFVGTNYSGEG-AAPQLCTYALG 435
                   +Q+VV+P GS VDFVGTNY GE  A  Q CTYALG
Sbjct: 86  KHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALG 128


>ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330838|gb|EFH61257.1| DNA binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 443

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
 Frame = +1

Query: 40  DSMGKRKEDLQNTTSPVQ-DQKXXXXXXAYSESQKNVKKKDTIDVKILTLREKSDKTSPL 216
           D    R E+ +   +P Q ++K        SE++   ++   I +K+  + E+ D+ SP+
Sbjct: 5   DKNEHRNEEEEEFNTPQQLEKKQRKGKEIASETEDQNEEDKRITLKVTQVSERPDRISPI 64

Query: 217 VGYFPTGFDPLKNGPMEAEASGPPEHSXXXXXXXXXXXXLQVVVTPNGSQVDFVGTNYSG 396
           V YF TG+DP K  P   +                    +QVVV+P G++V+FVGTNY+G
Sbjct: 65  VAYFSTGYDPCKVDPETGKRVHETPKVTVYKHKDDSKKRIQVVVSPPGARVEFVGTNYTG 124

Query: 397 EGAAPQLCTYALG 435
           E AA Q  TY +G
Sbjct: 125 EQAAMQTNTYRVG 137


>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
           predicted protein [Populus trichocarpa]
          Length = 472

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
 Frame = +1

Query: 121 AYSESQKNVKKKDTIDVKILTLREKSDKTSPLVGYFPTGFDPLKNGPME----------- 267
           A  +++  + ++  +DVK+  +  + DKT P+VGYFP+G++P K   +            
Sbjct: 40  AQLQNEPTINEQPRLDVKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAA 99

Query: 268 ---------AEASGPPEHSXXXXXXXXXXXXLQVVVTPNGSQVDFVGTNYSGEGAAPQLC 420
                    A+ +   + S            L++VV+PNGS V+FVG +Y GE  A QLC
Sbjct: 100 PPSVKLYRNAQRAKVEKSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLC 159

Query: 421 TYALG 435
           TYALG
Sbjct: 160 TYALG 164


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