BLASTX nr result

ID: Panax21_contig00014358 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014358
         (1147 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, ...   295   2e-77
emb|CBI35964.3| unnamed protein product [Vitis vinifera]              294   3e-77
ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]        291   2e-76
ref|XP_003542073.1| PREDICTED: uncharacterized RNA-binding prote...   280   6e-73
ref|XP_002327552.1| predicted protein [Populus trichocarpa] gi|2...   273   5e-71

>ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
            communis] gi|223539470|gb|EEF41060.1| Heterogeneous
            nuclear ribonucleoprotein A1, putative [Ricinus communis]
          Length = 412

 Score =  295 bits (754), Expect = 2e-77
 Identities = 141/187 (75%), Positives = 165/187 (88%)
 Frame = +1

Query: 499  SHPDSSAGKLFVGGIAWETTEESFSNYFSNYGEITDSVIMMDKLSGRPRGFGFVTFADHA 678
            S  DSS GKLFVGGI+WETTEE+F++YFS +GEITDSVIM D+ SGRPRGFGFVTFAD A
Sbjct: 72   SSSDSSQGKLFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFADLA 131

Query: 679  VADKVLEEDHVIDGRAVEVKRTVPREDMQVKGVLKTRKIFVGGIPLSLTEDELKEYFSSY 858
             AD+VLEEDH+ID RAVEVKRTVPRE+M+VKGV++ RKIFVGGIP +LTEDEL EYFS Y
Sbjct: 132  AADRVLEEDHIIDDRAVEVKRTVPREEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVY 191

Query: 859  GNVIEHQIMLDHKTGRSRGFGFVTYDNEDAVDKIFTDGQIHELGGKRVEIKKAEPKRAVS 1038
            GN++EHQIMLDHKTGRSRGFGFVT++ ED+V++IF+ G+ HELGGKRVEIKKA PKR   
Sbjct: 192  GNIVEHQIMLDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIKKAVPKRNGG 251

Query: 1039 DYGNDSR 1059
            DYG+  +
Sbjct: 252  DYGSSGK 258


>emb|CBI35964.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score =  294 bits (752), Expect = 3e-77
 Identities = 141/179 (78%), Positives = 166/179 (92%)
 Frame = +1

Query: 508  DSSAGKLFVGGIAWETTEESFSNYFSNYGEITDSVIMMDKLSGRPRGFGFVTFADHAVAD 687
            +S +GKLFVGGI+WET+EE F+NYFSNYGEITDSVIMMD+ +GRPRGFGF+TFAD AVAD
Sbjct: 47   NSYSGKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPAVAD 106

Query: 688  KVLEEDHVIDGRAVEVKRTVPREDMQVKGVLKTRKIFVGGIPLSLTEDELKEYFSSYGNV 867
            KVLEEDHVIDGRAVEVK+TVPRE M+V+GV KTRKIFVGGIP SLTEDELK+YFSSYG +
Sbjct: 107  KVLEEDHVIDGRAVEVKKTVPREGMEVRGVSKTRKIFVGGIPSSLTEDELKDYFSSYGAI 166

Query: 868  IEHQIMLDHKTGRSRGFGFVTYDNEDAVDKIFTDGQIHELGGKRVEIKKAEPKRAVSDY 1044
            +E+QIMLDH TGRSRGFGFVT+ +EDAV+++F++G+ HELGGK VEIKKAEPKRA ++Y
Sbjct: 167  VENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEPKRAGAEY 225


>ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]
          Length = 501

 Score =  291 bits (745), Expect = 2e-76
 Identities = 140/179 (78%), Positives = 163/179 (91%)
 Frame = +1

Query: 508  DSSAGKLFVGGIAWETTEESFSNYFSNYGEITDSVIMMDKLSGRPRGFGFVTFADHAVAD 687
            D    KLFVGGI+WET+EE F+NYFSNYGEITDSVIMMD+ +GRPRGFGF+TFAD AVAD
Sbjct: 195  DEDKEKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPAVAD 254

Query: 688  KVLEEDHVIDGRAVEVKRTVPREDMQVKGVLKTRKIFVGGIPLSLTEDELKEYFSSYGNV 867
            KVLEEDHVIDGRAVEVK+TVPRE M+V+GV KTRKIFVGGIP SLTEDELK+YFSSYG +
Sbjct: 255  KVLEEDHVIDGRAVEVKKTVPREGMEVRGVSKTRKIFVGGIPSSLTEDELKDYFSSYGAI 314

Query: 868  IEHQIMLDHKTGRSRGFGFVTYDNEDAVDKIFTDGQIHELGGKRVEIKKAEPKRAVSDY 1044
            +E+QIMLDH TGRSRGFGFVT+ +EDAV+++F++G+ HELGGK VEIKKAEPKRA ++Y
Sbjct: 315  VENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEPKRAGAEY 373


>ref|XP_003542073.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like [Glycine
            max]
          Length = 353

 Score =  280 bits (715), Expect = 6e-73
 Identities = 135/184 (73%), Positives = 160/184 (86%)
 Frame = +1

Query: 508  DSSAGKLFVGGIAWETTEESFSNYFSNYGEITDSVIMMDKLSGRPRGFGFVTFADHAVAD 687
            DS +GKLFVGGI+WET++ESF NYFS YGE+TDSVIM +KLSGRPRGFGFVTFA+ AVAD
Sbjct: 36   DSFSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFANSAVAD 95

Query: 688  KVLEEDHVIDGRAVEVKRTVPREDMQVKGVLKTRKIFVGGIPLSLTEDELKEYFSSYGNV 867
            +VL ++H ID R VEVKRTVPRED+ V GV KT+KIFVGGI    T+DEL+EYFS YGNV
Sbjct: 96   EVLAQEHTIDHRVVEVKRTVPREDVDVTGVFKTKKIFVGGIAQFFTDDELREYFSPYGNV 155

Query: 868  IEHQIMLDHKTGRSRGFGFVTYDNEDAVDKIFTDGQIHELGGKRVEIKKAEPKRAVSDYG 1047
            IE QIMLDH TGRSRGFGFVT+D+ED+V+K+F+ G+IHE+GGK+VEIK+AEPKR+  DY 
Sbjct: 156  IECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYC 215

Query: 1048 NDSR 1059
            N SR
Sbjct: 216  NTSR 219


>ref|XP_002327552.1| predicted protein [Populus trichocarpa] gi|222836106|gb|EEE74527.1|
            predicted protein [Populus trichocarpa]
          Length = 160

 Score =  273 bits (699), Expect = 5e-71
 Identities = 129/160 (80%), Positives = 149/160 (93%)
 Frame = +1

Query: 523  KLFVGGIAWETTEESFSNYFSNYGEITDSVIMMDKLSGRPRGFGFVTFADHAVADKVLEE 702
            KLFVGG++WETTEE+F+NYFS YGE+ DSVIM D+ SGRPRGFGFVTFAD AVAD+VLEE
Sbjct: 1    KLFVGGVSWETTEETFTNYFSKYGEVMDSVIMTDRHSGRPRGFGFVTFADPAVADRVLEE 60

Query: 703  DHVIDGRAVEVKRTVPREDMQVKGVLKTRKIFVGGIPLSLTEDELKEYFSSYGNVIEHQI 882
            DHVIDGRAVEVKRTVPREDM VKGV +T+KIFVGGIP SLTEDELKEYFS YG++++HQI
Sbjct: 61   DHVIDGRAVEVKRTVPREDMDVKGVTRTKKIFVGGIPPSLTEDELKEYFSVYGSIVDHQI 120

Query: 883  MLDHKTGRSRGFGFVTYDNEDAVDKIFTDGQIHELGGKRV 1002
            MLDHKTGRSRGFGFVT+D EDAV++IF++G+ HELGGK+V
Sbjct: 121  MLDHKTGRSRGFGFVTFDIEDAVEQIFSEGRTHELGGKQV 160


Top