BLASTX nr result

ID: Panax21_contig00014269 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014269
         (537 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloro...   220   1e-55
ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|1...   218   4e-55
ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|2...   213   1e-53
gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea bras...   208   4e-52
ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycin...   199   2e-49

>ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis
           vinifera] gi|302141873|emb|CBI19076.3| unnamed protein
           product [Vitis vinifera]
          Length = 167

 Score =  220 bits (560), Expect = 1e-55
 Identities = 113/140 (80%), Positives = 122/140 (87%)
 Frame = -2

Query: 422 MAQAVATPVIPSFSLICNTSITKTHHSNSISFPISTPTKFGGLSIKCARVGGVEIPNAKR 243
           MAQA+ATP+ PS SLICNT       SN++SF    P KFGGLSIKCARVGGVEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTR-NPLSPSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 59

Query: 242 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 63
           V+YSLQYIHGIGR+R+ QIL DL MENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 62  NIRRLKEIQCYRGVRHIQGL 3
            IRRLKEIQCYRG+RHIQGL
Sbjct: 120 AIRRLKEIQCYRGIRHIQGL 139


>ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|118488232|gb|ABK95935.1|
           unknown [Populus trichocarpa]
           gi|222843982|gb|EEE81529.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  218 bits (555), Expect = 4e-55
 Identities = 111/140 (79%), Positives = 120/140 (85%)
 Frame = -2

Query: 422 MAQAVATPVIPSFSLICNTSITKTHHSNSISFPISTPTKFGGLSIKCARVGGVEIPNAKR 243
           MAQ +A PV+PS S ICN  +  T  SNSIS PIS P K G LSI+CARVGGVEIPN+KR
Sbjct: 1   MAQTLAMPVVPSLSAICN-GLKSTSLSNSISLPISNPPKAGSLSIRCARVGGVEIPNSKR 59

Query: 242 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 63
           V+YSLQYIHGIGR+ A QIL+DL MENKITKDLSEEELI LRDEVSKY IEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSNARQILSDLSMENKITKDLSEEELIILRDEVSKYTIEGDLRRFNAL 119

Query: 62  NIRRLKEIQCYRGVRHIQGL 3
           NIRRLKEIQCYRG+RHIQGL
Sbjct: 120 NIRRLKEIQCYRGIRHIQGL 139


>ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|222856058|gb|EEE93605.1|
           predicted protein [Populus trichocarpa]
          Length = 168

 Score =  213 bits (543), Expect = 1e-53
 Identities = 110/140 (78%), Positives = 121/140 (86%)
 Frame = -2

Query: 422 MAQAVATPVIPSFSLICNTSITKTHHSNSISFPISTPTKFGGLSIKCARVGGVEIPNAKR 243
           MAQ +A PV+PS S ICN  +  T  S+SIS P+S P K   LSI+CARVGGVEIPN+KR
Sbjct: 1   MAQTLAIPVVPSLSAICN-GLKNTSLSSSISPPVSNPPKVCSLSIRCARVGGVEIPNSKR 59

Query: 242 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 63
           V+YSLQYIHGIGR+ A QIL+DL MENKITKDLSE+ELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSIARQILSDLTMENKITKDLSEDELITLRDEVSKYMIEGDLRRFNAL 119

Query: 62  NIRRLKEIQCYRGVRHIQGL 3
           NIRRLKEIQCYRGVRHIQGL
Sbjct: 120 NIRRLKEIQCYRGVRHIQGL 139


>gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
          Length = 168

 Score =  208 bits (530), Expect = 4e-52
 Identities = 107/140 (76%), Positives = 117/140 (83%)
 Frame = -2

Query: 422 MAQAVATPVIPSFSLICNTSITKTHHSNSISFPISTPTKFGGLSIKCARVGGVEIPNAKR 243
           MAQ +A PV PS SLICN        S  +S PIS P K  GLSI+CARVGGVEIPN KR
Sbjct: 1   MAQTLAMPVAPSLSLICN-GWRNNSLSTFVSLPISNPPKIHGLSIQCARVGGVEIPNNKR 59

Query: 242 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 63
           V+YSLQYIHG+GR+RA QIL+DL M+NKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGVGRSRARQILSDLSMQNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 62  NIRRLKEIQCYRGVRHIQGL 3
           NIR LKEIQC+RG+RHIQGL
Sbjct: 120 NIRGLKEIQCHRGIRHIQGL 139


>ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycine max]
           gi|255627531|gb|ACU14110.1| unknown [Glycine max]
          Length = 162

 Score =  199 bits (507), Expect = 2e-49
 Identities = 98/140 (70%), Positives = 119/140 (85%)
 Frame = -2

Query: 422 MAQAVATPVIPSFSLICNTSITKTHHSNSISFPISTPTKFGGLSIKCARVGGVEIPNAKR 243
           MAQ +A PV PS ++I N+ ++KT     +S P+    KF GLSIKC RVGGVEIPN KR
Sbjct: 1   MAQTLAMPVAPSLAIISNSRLSKT-----LSVPVLNNPKFQGLSIKCVRVGGVEIPNNKR 55

Query: 242 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 63
           ++YSLQ+IHG+GRTRA QIL D++M+NKITK+L+EEELITLRDEVSKYMIEGDLRRFNA+
Sbjct: 56  IEYSLQHIHGVGRTRAKQILCDIQMDNKITKELTEEELITLRDEVSKYMIEGDLRRFNAV 115

Query: 62  NIRRLKEIQCYRGVRHIQGL 3
           NI+RLK+IQCYRG+RHIQGL
Sbjct: 116 NIKRLKDIQCYRGIRHIQGL 135


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