BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014048
         (985 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   223   2e-90
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   224   1e-89
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   209   1e-85
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   207   2e-85
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   214   5e-83

>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  223 bits (568), Expect(2) = 2e-90
 Identities = 104/122 (85%), Positives = 113/122 (92%), Gaps = 1/122 (0%)
 Frame = -1

Query: 616 LPIDSCVIGAHHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRSFIQLPKPV 437
           +PIDSC +GAH+SAFLQQASYITGGVY+KPQ LDGLFQYL+TVFATDLHSRSFIQLP+P 
Sbjct: 168 VPIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPA 227

Query: 436 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSAFGQPQA-ASSTSNLKRKAP 260
           GVDFRASCFCHK TIDMGYICSVCLSIFC HHKKCSTCGS FGQ Q+  SSTS+LKRKAP
Sbjct: 228 GVDFRASCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAP 287

Query: 259 DT 254
           +T
Sbjct: 288 ET 289



 Score =  136 bits (343), Expect(2) = 2e-90
 Identities = 75/107 (70%), Positives = 80/107 (74%), Gaps = 9/107 (8%)
 Frame = -3

Query: 983 YIYDSSLAPPNQRAE---------SLLQKLEEFVSKDEELSTEDSVDAIKPSLLSGSLSM 831
           YIYDSS       +E         +LLQKLEEF+ KDE+L  E S  AIK SLLSGSLSM
Sbjct: 61  YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120

Query: 830 ALCYIQRVFRSGSLHPHPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 690
           ALCYIQRVFRSG LHP PRILCL GSPDGP QYVAVMN+IFSAQRSM
Sbjct: 121 ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 167


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  224 bits (570), Expect(2) = 1e-89
 Identities = 105/122 (86%), Positives = 112/122 (91%), Gaps = 1/122 (0%)
 Frame = -1

Query: 616 LPIDSCVIGAHHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRSFIQLPKPV 437
           +PIDSCVIGA HSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSR F+QLPKP 
Sbjct: 176 VPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPA 235

Query: 436 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSAFGQPQA-ASSTSNLKRKAP 260
           GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGS FGQ Q+  +S ++ KRK P
Sbjct: 236 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTP 295

Query: 259 DT 254
           +T
Sbjct: 296 ET 297



 Score =  133 bits (334), Expect(2) = 1e-89
 Identities = 72/107 (67%), Positives = 79/107 (73%), Gaps = 9/107 (8%)
 Frame = -3

Query: 983 YIYDSSLAPPNQRAES---------LLQKLEEFVSKDEELSTEDSVDAIKPSLLSGSLSM 831
           +I+DSS  P N   E+         LLQKLEEFV+ DE+LS E     I  SLLSGSLSM
Sbjct: 69  FIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSM 128

Query: 830 ALCYIQRVFRSGSLHPHPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 690
           ALCYIQRVFR+G LHP PRILCL GSPDGP QYVAVMN+IFSAQRSM
Sbjct: 129 ALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 175


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  209 bits (532), Expect(2) = 1e-85
 Identities = 98/123 (79%), Positives = 109/123 (88%), Gaps = 2/123 (1%)
 Frame = -1

Query: 616 LPIDSCVIGAHHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRSFIQLPKPV 437
           +PIDSC IG  +SAFLQQASYITGGV+  P+QLDGLFQYL+T+FATDLHSRSF+QLPKP+
Sbjct: 179 VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPI 238

Query: 436 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSAFGQPQA--ASSTSNLKRKA 263
           GVDFRASCFCHK TIDMGYICSVCLSIFC+HHKKCSTCGS FGQ +   ASS S+ KRKA
Sbjct: 239 GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKA 298

Query: 262 PDT 254
           P T
Sbjct: 299 PST 301



 Score =  134 bits (338), Expect(2) = 1e-85
 Identities = 76/110 (69%), Positives = 81/110 (73%), Gaps = 12/110 (10%)
 Frame = -3

Query: 983 YIYDSSLAPPNQRAES-----------LLQKLEEFVSKDEELSTED-SVDAIKPSLLSGS 840
           YIYDSSL   +   ES           LL+KLE+FV+KDEELS E+ S D I   LLSGS
Sbjct: 69  YIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGS 128

Query: 839 LSMALCYIQRVFRSGSLHPHPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 690
           LSMALCYIQRVFRSG LHP PRILCL GSPDGP QYVAVMNSIFSAQR M
Sbjct: 129 LSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score =  207 bits (528), Expect(2) = 2e-85
 Identities = 97/123 (78%), Positives = 108/123 (87%), Gaps = 2/123 (1%)
 Frame = -1

Query: 616 LPIDSCVIGAHHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRSFIQLPKPV 437
           +PIDSC IG  +SAFLQQASYITGGV+  P+QLDGLFQYL+T+FATDLHSR F+QLPKP+
Sbjct: 179 VPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPI 238

Query: 436 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSAFGQPQA--ASSTSNLKRKA 263
           GVDFRASCFCHK TIDMGYICSVCLSIFC+HHKKCSTCGS FGQ +   ASS S+ KRKA
Sbjct: 239 GVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKA 298

Query: 262 PDT 254
           P T
Sbjct: 299 PST 301



 Score =  135 bits (340), Expect(2) = 2e-85
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 12/110 (10%)
 Frame = -3

Query: 983 YIYDSSLAPPNQRAES-----------LLQKLEEFVSKDEELSTED-SVDAIKPSLLSGS 840
           YIYDSSL   +   ES           LL+KLEEFV+KDEELS E+ S D I   LLSGS
Sbjct: 69  YIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGS 128

Query: 839 LSMALCYIQRVFRSGSLHPHPRILCLHGSPDGPGQYVAVMNSIFSAQRSM 690
           LSMALCYIQRVFRSG LHP PRILCL GSPDGP QYVAVMNSIFSAQR M
Sbjct: 129 LSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLM 178


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  214 bits (545), Expect(2) = 5e-83
 Identities = 99/121 (81%), Positives = 108/121 (89%), Gaps = 1/121 (0%)
 Frame = -1

Query: 616 LPIDSCVIGAHHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRSFIQLPKPV 437
           +PIDSC IG+H+SAFLQQASYITGGVYLKPQQ+DGLFQYLSTVF TDLHSR+F+QLPK V
Sbjct: 175 VPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSV 234

Query: 436 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSAFGQ-PQAASSTSNLKRKAP 260
           GVDFRASCFCHK TIDMGY+CSVCLSIFCKHHKKCSTCGS FG+ P    S S LKRK P
Sbjct: 235 GVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTP 294

Query: 259 D 257
           +
Sbjct: 295 E 295



 Score =  120 bits (302), Expect(2) = 5e-83
 Identities = 61/82 (74%), Positives = 66/82 (80%)
 Frame = -3

Query: 935 LLQKLEEFVSKDEELSTEDSVDAIKPSLLSGSLSMALCYIQRVFRSGSLHPHPRILCLHG 756
           LL+ LEEFV  DE+   ED       SLLSGSLSMALCYIQ+VFRSGSLHP PRILCL G
Sbjct: 93  LLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQG 152

Query: 755 SPDGPGQYVAVMNSIFSAQRSM 690
           SPDGP QYVA+MN+IFSAQRSM
Sbjct: 153 SPDGPEQYVAIMNAIFSAQRSM 174