BLASTX nr result

ID: Panax21_contig00014026 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00014026
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putativ...   258   5e-67
ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   256   1e-66
emb|CBI26203.3| unnamed protein product [Vitis vinifera]              256   1e-66
ref|XP_002315792.1| predicted protein [Populus trichocarpa] gi|2...   253   1e-65
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   241   4e-62

>ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 476

 Score =  258 bits (658), Expect = 5e-67
 Identities = 120/153 (78%), Positives = 142/153 (92%)
 Frame = -2

Query: 460 VDFMFNSSKQISSVRKLLTSYSTRNTRQTIFASASVPQHRRFLYDCIQQKWTKADVVHVH 281
           VDFMFNSSKQ+SS+RKLLTSYS+ N+RQT+FASAS+PQHRRFLYDCIQQKWTK+D VHVH
Sbjct: 237 VDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHRRFLYDCIQQKWTKSDAVHVH 296

Query: 280 VNPIEPMPSRLHHRFVICGKNERHSTLLSLLQSDAPQSAIIFVGEQSEKSKKAGNAPPTT 101
           +NP++PMPS L HRFVIC KN+RH  LLSLLQ DAP+S I+FVGEQSEKSKKAG+APPTT
Sbjct: 297 INPVQPMPSCLQHRFVICSKNQRHQILLSLLQCDAPKSGIVFVGEQSEKSKKAGHAPPTT 356

Query: 100 ILIDLLKSSHAGCSDILLLDDDMNFNLRAASLS 2
           +L+D L++S++ CSDILLL++DMNFNLRAASLS
Sbjct: 357 LLVDFLETSYSDCSDILLLEEDMNFNLRAASLS 389


>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Vitis vinifera]
          Length = 482

 Score =  256 bits (654), Expect = 1e-66
 Identities = 123/153 (80%), Positives = 137/153 (89%)
 Frame = -2

Query: 460 VDFMFNSSKQISSVRKLLTSYSTRNTRQTIFASASVPQHRRFLYDCIQQKWTKADVVHVH 281
           VDFMFN+SKQ+ S+RKLLTSYS+ N RQT+FASAS+PQHRRFL+DCIQQKWTK+DVVHVH
Sbjct: 239 VDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVH 298

Query: 280 VNPIEPMPSRLHHRFVICGKNERHSTLLSLLQSDAPQSAIIFVGEQSEKSKKAGNAPPTT 101
           VNPIEPMPS LHHRFVIC K ER  TLLSLL SDAP+  IIFVGEQSEKSKKAGNAP  T
Sbjct: 299 VNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSAT 358

Query: 100 ILIDLLKSSHAGCSDILLLDDDMNFNLRAASLS 2
           +LID LK+S+ GC DILLL++DMNFNLRAASLS
Sbjct: 359 LLIDFLKTSYGGCPDILLLEEDMNFNLRAASLS 391


>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  256 bits (654), Expect = 1e-66
 Identities = 123/153 (80%), Positives = 137/153 (89%)
 Frame = -2

Query: 460 VDFMFNSSKQISSVRKLLTSYSTRNTRQTIFASASVPQHRRFLYDCIQQKWTKADVVHVH 281
           VDFMFN+SKQ+ S+RKLLTSYS+ N RQT+FASAS+PQHRRFL+DCIQQKWTK+DVVHVH
Sbjct: 243 VDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVH 302

Query: 280 VNPIEPMPSRLHHRFVICGKNERHSTLLSLLQSDAPQSAIIFVGEQSEKSKKAGNAPPTT 101
           VNPIEPMPS LHHRFVIC K ER  TLLSLL SDAP+  IIFVGEQSEKSKKAGNAP  T
Sbjct: 303 VNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSAT 362

Query: 100 ILIDLLKSSHAGCSDILLLDDDMNFNLRAASLS 2
           +LID LK+S+ GC DILLL++DMNFNLRAASLS
Sbjct: 363 LLIDFLKTSYGGCPDILLLEEDMNFNLRAASLS 395


>ref|XP_002315792.1| predicted protein [Populus trichocarpa] gi|222864832|gb|EEF01963.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  253 bits (646), Expect = 1e-65
 Identities = 122/153 (79%), Positives = 137/153 (89%)
 Frame = -2

Query: 460 VDFMFNSSKQISSVRKLLTSYSTRNTRQTIFASASVPQHRRFLYDCIQQKWTKADVVHVH 281
           VDFMFNSSKQ+SS+RKLLTSYS+ N+RQT+FASAS+PQH RFLYDCIQQKWTK DVVHVH
Sbjct: 71  VDFMFNSSKQVSSLRKLLTSYSSCNSRQTVFASASIPQHNRFLYDCIQQKWTKRDVVHVH 130

Query: 280 VNPIEPMPSRLHHRFVICGKNERHSTLLSLLQSDAPQSAIIFVGEQSEKSKKAGNAPPTT 101
           VNPIEPMP+ L HRFVIC K +RH TLLSLLQSDAP+S IIFVGEQSEKSKKAGN PPT 
Sbjct: 131 VNPIEPMPTCLQHRFVICSKKQRHQTLLSLLQSDAPKSGIIFVGEQSEKSKKAGNGPPTI 190

Query: 100 ILIDLLKSSHAGCSDILLLDDDMNFNLRAASLS 2
            L+D LK+S+  CS+ILLL++DMNFN RAASLS
Sbjct: 191 DLVDFLKTSYGDCSEILLLEEDMNFNSRAASLS 223


>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
           gi|11385590|gb|AAG34876.1|AF261021_1 putative
           chloroplast RNA helicase VDL isoform 1 [Nicotiana
           tabacum]
          Length = 466

 Score =  241 bits (615), Expect = 4e-62
 Identities = 116/153 (75%), Positives = 134/153 (87%)
 Frame = -2

Query: 460 VDFMFNSSKQISSVRKLLTSYSTRNTRQTIFASASVPQHRRFLYDCIQQKWTKADVVHVH 281
           VDFMFNSSK+ISS+++LLTSYST   RQTIFASAS+PQHRRFLYDC+QQKWTKADVVHVH
Sbjct: 227 VDFMFNSSKEISSLKRLLTSYSTSKNRQTIFASASIPQHRRFLYDCVQQKWTKADVVHVH 286

Query: 280 VNPIEPMPSRLHHRFVICGKNERHSTLLSLLQSDAPQSAIIFVGEQSEKSKKAGNAPPTT 101
           VN +EPMPS LHHRFV+C K E++  LLSLLQ D+P+SAIIFV EQSEKSKKAGNAPP T
Sbjct: 287 VNSVEPMPSCLHHRFVVCTKREKNQVLLSLLQVDSPESAIIFVSEQSEKSKKAGNAPPIT 346

Query: 100 ILIDLLKSSHAGCSDILLLDDDMNFNLRAASLS 2
           +L+D L SS  G S++ LL++DMNFN RAASLS
Sbjct: 347 LLVDFLMSSSGGFSNVSLLEEDMNFNKRAASLS 379


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