BLASTX nr result

ID: Panax21_contig00013939 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013939
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26041.3| unnamed protein product [Vitis vinifera]              249   2e-64
ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   249   2e-64
ref|XP_002314343.1| predicted protein [Populus trichocarpa] gi|2...   244   4e-63
emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]   236   1e-60
ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   224   4e-57

>emb|CBI26041.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  249 bits (636), Expect = 2e-64
 Identities = 127/152 (83%), Positives = 139/152 (91%)
 Frame = +1

Query: 1   TDYMIESLRSRLFNRPSHIQAMAFAPVIEKKSCIIADQSGSGKTMAYLLPVIQRLRQEEL 180
           +DYMIESLR +LF RPSHIQAMAFA V+E KSCIIADQSGSGKT+AYLLPVIQRLR+EEL
Sbjct: 249 SDYMIESLRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEEL 308

Query: 181 QGLGKSLAQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVATGGFRQKTQLESLRQ 360
           QGLGKS A  P+VVILVPTAELASQVLSNCR +SKFG PFRSM ATGGFRQ+TQLE+L+Q
Sbjct: 309 QGLGKSSAGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQ 368

Query: 361 DLDVLIATPGRFTYLVKEGFLHLTNLTCAVLD 456
           DLDVLIATPGRF +L+KEGFL LTNL CAVLD
Sbjct: 369 DLDVLIATPGRFMFLIKEGFLQLTNLRCAVLD 400


>ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
           vinifera]
          Length = 707

 Score =  249 bits (636), Expect = 2e-64
 Identities = 127/152 (83%), Positives = 139/152 (91%)
 Frame = +1

Query: 1   TDYMIESLRSRLFNRPSHIQAMAFAPVIEKKSCIIADQSGSGKTMAYLLPVIQRLRQEEL 180
           +DYMIESLR +LF RPSHIQAMAFA V+E KSCIIADQSGSGKT+AYLLPVIQRLR+EEL
Sbjct: 308 SDYMIESLRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEEL 367

Query: 181 QGLGKSLAQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVATGGFRQKTQLESLRQ 360
           QGLGKS A  P+VVILVPTAELASQVLSNCR +SKFG PFRSM ATGGFRQ+TQLE+L+Q
Sbjct: 368 QGLGKSSAGCPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQ 427

Query: 361 DLDVLIATPGRFTYLVKEGFLHLTNLTCAVLD 456
           DLDVLIATPGRF +L+KEGFL LTNL CAVLD
Sbjct: 428 DLDVLIATPGRFMFLIKEGFLQLTNLRCAVLD 459


>ref|XP_002314343.1| predicted protein [Populus trichocarpa] gi|222863383|gb|EEF00514.1|
           predicted protein [Populus trichocarpa]
          Length = 425

 Score =  244 bits (624), Expect = 4e-63
 Identities = 122/152 (80%), Positives = 139/152 (91%)
 Frame = +1

Query: 1   TDYMIESLRSRLFNRPSHIQAMAFAPVIEKKSCIIADQSGSGKTMAYLLPVIQRLRQEEL 180
           TD+MIESL+ ++F RPSHIQAMAFAPVI+ KSCIIADQSGSGKTMAYL+P+IQRLRQEEL
Sbjct: 25  TDFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTMAYLIPLIQRLRQEEL 84

Query: 181 QGLGKSLAQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVATGGFRQKTQLESLRQ 360
           QGLG+S +Q+PRV+ILVPTAELASQVL+NCR MSK GVPFRSMV TGGFRQ+TQLE+L Q
Sbjct: 85  QGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVVTGGFRQRTQLENLEQ 144

Query: 361 DLDVLIATPGRFTYLVKEGFLHLTNLTCAVLD 456
            +DVLIATPGRF +L+KEGFL L NL CAVLD
Sbjct: 145 GVDVLIATPGRFMFLIKEGFLKLQNLKCAVLD 176


>emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]
          Length = 563

 Score =  236 bits (602), Expect = 1e-60
 Identities = 128/179 (71%), Positives = 139/179 (77%), Gaps = 27/179 (15%)
 Frame = +1

Query: 1   TDYMIESLRSRLFNRPSHIQAMAFAPVIEKKSCIIADQSGSGKTMAYLLPVIQRLRQEEL 180
           +DYMIESLR +LF RPSHIQAMAFA V+E KSCIIADQSGSGKT+AYLLPVIQRLR+EEL
Sbjct: 137 SDYMIESLRGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEEL 196

Query: 181 QGLGKSLAQNPRVVILVPTAELASQ---------------------------VLSNCRLM 279
           QGLGKS A  PRVVILVPTAELASQ                           VLSNCR +
Sbjct: 197 QGLGKSSAGCPRVVILVPTAELASQMRFCYVCGSFNANNVVQEHKDKTIHTKVLSNCRSI 256

Query: 280 SKFGVPFRSMVATGGFRQKTQLESLRQDLDVLIATPGRFTYLVKEGFLHLTNLTCAVLD 456
           SKFG PFRSM ATGGFRQ+TQLE+L+QDLDVLIATPGRF +L+KEGFL LTNL CAVLD
Sbjct: 257 SKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLD 315


>ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
           max]
          Length = 530

 Score =  224 bits (572), Expect = 4e-57
 Identities = 110/155 (70%), Positives = 132/155 (85%), Gaps = 3/155 (1%)
 Frame = +1

Query: 1   TDYMIESLRSRLFNRPSHIQAMAFAPVIEKKSCIIADQSGSGKTMAYLLPVIQRLRQEEL 180
           ++YMIESL+  LF+RPSH+QAMAF PVI  K+C+IADQSGSGKT AYL P+IQRLRQ+EL
Sbjct: 132 SEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPIIQRLRQQEL 191

Query: 181 QGL---GKSLAQNPRVVILVPTAELASQVLSNCRLMSKFGVPFRSMVATGGFRQKTQLES 351
           +G+     S A +PRV++L PTAELASQVL NCR +SK GVPF+SMV TGGFRQKTQLE+
Sbjct: 192 EGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLEN 251

Query: 352 LRQDLDVLIATPGRFTYLVKEGFLHLTNLTCAVLD 456
           L+Q +DVLIATPGRF +L+ +GFLHLTNL CAVLD
Sbjct: 252 LQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLD 286


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