BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013547
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...    75   4e-12
ref|XP_002532948.1| RNA polymerase II transcription factor B sub...    72   6e-11
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...    69   4e-10
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...    68   7e-10
ref|XP_004170865.1| PREDICTED: general transcription factor IIH ...    67   1e-09

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 40/76 (52%), Positives = 47/76 (61%)
 Frame = -3

Query: 230 MTPVSSKLYTDDVSFLMVLIDTNPYFWSTTNNGLSFPKFLSHXXXXXXXXXXXXXXXXXX 51
           M PV SKLY+DDVS L+VL+DTNP+FWST +  L F KFLSH                  
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFWSTAS--LPFSKFLSHVLAFLNSILLINQLNQVV 58

Query: 50  XXATGFNSCNYIYDSS 3
             ATG NSCN+I+DSS
Sbjct: 59  VIATGCNSCNFIFDSS 74


>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/76 (48%), Positives = 47/76 (61%)
 Frame = -3

Query: 230 MTPVSSKLYTDDVSFLMVLIDTNPYFWSTTNNGLSFPKFLSHXXXXXXXXXXXXXXXXXX 51
           M  V SKLY+DDVS +MVL+DTNP+FW+T++  L F +FLSH                  
Sbjct: 1   MASVPSKLYSDDVSLVMVLLDTNPFFWTTSS--LPFSQFLSHVLAFLNSILLLNQLNQVV 58

Query: 50  XXATGFNSCNYIYDSS 3
             A G+NSC+YIYDSS
Sbjct: 59  VIANGYNSCDYIYDSS 74


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = -3

Query: 230 MTPVSSKLYTDDVSFLMVLIDTNPYFWSTTNNGLSFPKFLSHXXXXXXXXXXXXXXXXXX 51
           M  ++SK Y+DDVS L++L+DTNP FWSTT+  ++F +FLSH                  
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 50  XXATGFNSCNYIYDSS 3
             ATG++SC+YIYDSS
Sbjct: 59  VIATGYSSCDYIYDSS 74


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/76 (47%), Positives = 47/76 (61%)
 Frame = -3

Query: 230 MTPVSSKLYTDDVSFLMVLIDTNPYFWSTTNNGLSFPKFLSHXXXXXXXXXXXXXXXXXX 51
           M  V SK Y+DDVS L++L+DTNP FWSTT+  ++F +FLSH                  
Sbjct: 1   MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTS--ITFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 50  XXATGFNSCNYIYDSS 3
             ATG++SC+YIYDSS
Sbjct: 59  VIATGYSSCDYIYDSS 74


>ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 187

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/76 (46%), Positives = 42/76 (55%)
 Frame = -3

Query: 230 MTPVSSKLYTDDVSFLMVLIDTNPYFWSTTNNGLSFPKFLSHXXXXXXXXXXXXXXXXXX 51
           M    SKLY DDVS L+VL+DTNP+FWST  + L F KFLSH                  
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFWST--SALPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 50  XXATGFNSCNYIYDSS 3
              TG+ SC Y+Y+SS
Sbjct: 59  VIGTGYASCKYLYNSS 74