BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013499
         (925 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE05745.1| OSJNBb0017I01.25 [Oryza sativa Japonica Group] g...   222   1e-55
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     216   8e-54
gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Ja...   216   8e-54
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   215   1e-53
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   214   2e-53

>emb|CAE05745.1| OSJNBb0017I01.25 [Oryza sativa Japonica Group]
            gi|32488627|emb|CAE03420.1| OSJNBa0032F06.3 [Oryza sativa
            Japonica Group]
          Length = 1728

 Score =  222 bits (565), Expect = 1e-55
 Identities = 120/299 (40%), Positives = 175/299 (58%), Gaps = 4/299 (1%)
 Frame = +3

Query: 39   EAPLYGFS-NDPVKVAGTIELPVIFGTAPQQVEITCKFYVVHVDSAYNAILGRPTLTALQ 215
            + P +G +     +  G I LPV FG A         F V   D+AYNAI+GR  L    
Sbjct: 750  DQPFHGITPQSSSRPLGKITLPVTFGQANNFRTKQITFDVAEFDTAYNAIIGRTALAKFM 809

Query: 216  AVTSIPHFKIKFPTAHGVGEVAGDLDLARRCYRNAVISSGVGVSKQKQTMT-IEIEPFTE 392
            A +   +  +K P   G   + G+  LA +C              +KQ++  +E  P   
Sbjct: 810  AASHYAYQVLKMPRPKGTITIQGNAKLAVQC--------------EKQSLDMVEQTPSPP 855

Query: 393  SSSEP--LVIPAGETEEIELVLGKKDKTVKIGSGLPEPLRTNLMELLRCYADIFAWEPQD 566
            +++EP   V    +T +++  +    K V + S  P+     L+  LR  AD+FAW+  D
Sbjct: 856  ATTEPPKKVTKTNKTPKLDSAI----KIVPLSSANPDKTELALITFLRDNADVFAWQLSD 911

Query: 567  MPGISRKIAEHRLDVDPSKKPARQRRRIFAPERQRIVDEEITKLIAADFIFEIDYPEWMA 746
            MPG+ R++ EH+L V P  KP +QR R FAP+R++ + EE+ KL+ A FI E+ +PEW+A
Sbjct: 912  MPGVPREVIEHKLMVRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVLHPEWLA 971

Query: 747  NVVLVQKQNGKWRVCIDYTDLNKACPKDFYPLPHIDQLIDATSGYALLSFMDVFSGYHQ 923
            N V+++K NGKWR+C+D+TDLNKACPKD +PLP IDQL+D+T+G  LLSF+D +SGYHQ
Sbjct: 972  NPVMLRKSNGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCELLSFLDAYSGYHQ 1030


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  216 bits (549), Expect = 8e-54
 Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 10/303 (3%)
 Frame = +3

Query: 45   PLYGFSNDPVKVAGTIELPVIFGTAPQQVEITCKFYVVHVDSAYNAILGRPTLTALQAVT 224
            PLY FS   +   G+I LPV+FG       +  +F V+   SAYN ++GR TL+   AV 
Sbjct: 111  PLYSFSGAGLVPLGSIRLPVMFGQTDAAKNVLSEFVVIDGSSAYNVLIGRVTLSEADAVM 170

Query: 225  SIPHFKIKFPTAHGV----------GEVAGDLDLARRCYRNAVISSGVGVSKQKQTMTIE 374
            SI    + + +  G            EV      AR C   ++  +      +  ++  E
Sbjct: 171  SIRALTLMYVSDQGEVQKLVSKDERDEVVNVQISARGCNMQSLKVAKKSEKGKSPSLRQE 230

Query: 375  IEPFTESSSEPLVIPAGETEEIELVLGKKDKTVKIGSGLPEPLRTNLMELLRCYADIFAW 554
             +P   S++   ++   ETE++E+  G+   TV +G GL    R +L++LLR   D+FA+
Sbjct: 231  GDPM--STNNVSMVEGAETEQVEIDPGR---TVTVGVGLEPKFRADLLDLLRKNKDVFAY 285

Query: 555  EPQDMPGISRKIAEHRLDVDPSKKPARQRRRIFAPERQRIVDEEITKLIAADFIFEIDYP 734
               +MPG+SR++  H+L+V  + +P +Q+ R  + E+   +  E+ KL+ A FI    YP
Sbjct: 286  SAAEMPGVSREVIVHKLNVLSNARPVKQKMRNSSAEKDDAIKAEVDKLLEAGFIMPCTYP 345

Query: 735  EWMANVVLVQKQNGKWRVCIDYTDLNKACPKDFYPLPHIDQLIDATSGYALLSFMDVFSG 914
            EW+ANVV+V+K +G WR+C+D+T+LNKACPKD YPLP ID LIDAT+ Y +LS +D FSG
Sbjct: 346  EWLANVVMVKKSSGGWRMCVDFTNLNKACPKDCYPLPRIDSLIDATASYTMLSLLDAFSG 405

Query: 915  YHQ 923
            YHQ
Sbjct: 406  YHQ 408


>gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
          Length = 2079

 Score =  216 bits (549), Expect = 8e-54
 Identities = 120/298 (40%), Positives = 171/298 (57%), Gaps = 3/298 (1%)
 Frame = +3

Query: 39   EAPLYGFS-NDPVKVAGTIELPVIFGTAPQQVEITCKFYVVHVDSAYNAILGRPTLTALQ 215
            + P +G +     +  G I LPV FG A         F V   D+AYNAI+GR  L    
Sbjct: 916  DQPFHGITPQSSSRPLGKITLPVTFGQANNFRTEQITFDVAEFDTAYNAIIGRTALAKFV 975

Query: 216  AVTSIPHFKIKFPTAHGVGEVAGDLDLARRCYRNAVISSGVGVSKQKQTMTIEIEPFTES 395
            A +   +  +K P   G   + G+  LA +C + ++               +E  P   +
Sbjct: 976  AASHYAYQVLKMPGPKGTITIQGNAKLAVQCDKRSLDM-------------VEQTPTPPA 1022

Query: 396  SSEP--LVIPAGETEEIELVLGKKDKTVKIGSGLPEPLRTNLMELLRCYADIFAWEPQDM 569
            +SEP   V    +T +    +    K V + S  P+     L+  LR  AD+FAW+P DM
Sbjct: 1023 TSEPPKKVRKPNKTPKPNGAV----KIVPLSSANPDKNELALIAFLRDNADVFAWQPSDM 1078

Query: 570  PGISRKIAEHRLDVDPSKKPARQRRRIFAPERQRIVDEEITKLIAADFIFEIDYPEWMAN 749
            PG+ R++ EH+L V P  KP +QR R FAP+R++ + EE+ KL+ A FI E+ +PEW+AN
Sbjct: 1079 PGVPREVIEHKLMVRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVLHPEWLAN 1138

Query: 750  VVLVQKQNGKWRVCIDYTDLNKACPKDFYPLPHIDQLIDATSGYALLSFMDVFSGYHQ 923
             V+V+K NGKWR+C+D+TDLNKACPKD +PLP IDQL+ +T+G  LLSF+D +SGYHQ
Sbjct: 1139 PVIVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVYSTAGCELLSFLDAYSGYHQ 1196


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  215 bits (548), Expect = 1e-53
 Identities = 119/309 (38%), Positives = 176/309 (56%), Gaps = 7/309 (2%)
 Frame = +3

Query: 18   RKMEVGQE------APLYGFSNDPVKVAGTIELPVIFGTAPQQVEITCKFYVVHVDSAYN 179
            +KM++ ++       PL GF    V   G I L V+FG      +    F VV +   YN
Sbjct: 786  KKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYN 845

Query: 180  AILGRPTLTALQAVTSIPHFKIKFPTAHGVGEVAGDLDLARRCYRNAVIS-SGVGVSKQK 356
            AILGR T+   +A+    +  +K P   GV  V G+  +AR+       S  GV V  QK
Sbjct: 846  AILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLVARKYELQGTPSVKGVHVVDQK 905

Query: 357  QTMTIEIEPFTESSSEPLVIPAGETEEIELVLGKKDKTVKIGSGLPEPLRTNLMELLRCY 536
            Q   I+I+           IP G+T++++L      K + IG  L + +   ++++++  
Sbjct: 906  QGEYIKIQK---------PIPEGKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKEN 956

Query: 537  ADIFAWEPQDMPGISRKIAEHRLDVDPSKKPARQRRRIFAPERQRIVDEEITKLIAADFI 716
              +FAW P ++ G+ R + EH L +    KP +Q+ R  + +RQ+    E+ KL+ A  I
Sbjct: 957  MAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVI 1016

Query: 717  FEIDYPEWMANVVLVQKQNGKWRVCIDYTDLNKACPKDFYPLPHIDQLIDATSGYALLSF 896
             E+ +PEW+AN VLV+K NGKWR+CID+TDLNKACPKD +PLP IDQL+DAT+G  L+SF
Sbjct: 1017 REVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSF 1076

Query: 897  MDVFSGYHQ 923
            +D +SGYHQ
Sbjct: 1077 LDAYSGYHQ 1085


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  214 bits (546), Expect = 2e-53
 Identities = 119/309 (38%), Positives = 175/309 (56%), Gaps = 7/309 (2%)
 Frame = +3

Query: 18   RKMEVGQE------APLYGFSNDPVKVAGTIELPVIFGTAPQQVEITCKFYVVHVDSAYN 179
            +KM++ ++       PL GF    V   G I L V+FG      +    F VV +   YN
Sbjct: 786  KKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYN 845

Query: 180  AILGRPTLTALQAVTSIPHFKIKFPTAHGVGEVAGDLDLARRCYRNAVIS-SGVGVSKQK 356
            AILGR T+   +A+    +  +K P   GV  V G+   AR+       S  GV V  QK
Sbjct: 846  AILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLAARKYELQGTPSVKGVHVVDQK 905

Query: 357  QTMTIEIEPFTESSSEPLVIPAGETEEIELVLGKKDKTVKIGSGLPEPLRTNLMELLRCY 536
            Q   I+I+           IP G+T++++L      K + IG  L + +   ++++++  
Sbjct: 906  QGEYIKIQK---------PIPEGKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKEN 956

Query: 537  ADIFAWEPQDMPGISRKIAEHRLDVDPSKKPARQRRRIFAPERQRIVDEEITKLIAADFI 716
              +FAW P ++ G+ R + EH L +    KP +Q+ R  + +RQ+    E+ KL+ A  I
Sbjct: 957  MAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVI 1016

Query: 717  FEIDYPEWMANVVLVQKQNGKWRVCIDYTDLNKACPKDFYPLPHIDQLIDATSGYALLSF 896
             E+ +PEW+AN VLV+K NGKWR+CID+TDLNKACPKD +PLP IDQL+DAT+G  L+SF
Sbjct: 1017 REVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSF 1076

Query: 897  MDVFSGYHQ 923
            +D +SGYHQ
Sbjct: 1077 LDAYSGYHQ 1085