BLASTX nr result

ID: Panax21_contig00013492 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013492
         (940 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|2...    64   3e-19
ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-18
ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus com...    61   2e-18
ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis...    62   8e-17
ref|XP_003516411.1| PREDICTED: F-box/LRR-repeat protein 3-like [...    60   1e-16

>ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|222855144|gb|EEE92691.1|
           predicted protein [Populus trichocarpa]
          Length = 666

 Score = 63.5 bits (153), Expect(2) = 3e-19
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = -3

Query: 170 LSKCM*VIDEGLSSLVTTNKDLRKLDITCCRKITHISI 57
           LSKC+ V DEGLSSLVT +KDL+KLDITCCRKIT +SI
Sbjct: 337 LSKCLGVTDEGLSSLVTKHKDLKKLDITCCRKITDVSI 374



 Score = 58.2 bits (139), Expect(2) = 3e-19
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -1

Query: 277 LQNLSMLQSIKLDSCQVTCYGLKAIGNWCISLRELS 170
           L++LS+LQS+KLD C VT  GLKAIGNWCISL ELS
Sbjct: 301 LRSLSILQSVKLDGCPVTSAGLKAIGNWCISLSELS 336


>ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|222868268|gb|EEF05399.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 64.3 bits (155), Expect(2) = 1e-18
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = -3

Query: 170 LSKCM*VIDEGLSSLVTTNKDLRKLDITCCRKITHISIFCVHN 42
           LSKC+ V DEGLSSLVT +KDL+KLDITCCRKIT +SI  + N
Sbjct: 339 LSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKITDVSIAYITN 381



 Score = 55.8 bits (133), Expect(2) = 1e-18
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = -1

Query: 277 LQNLSMLQSIKLDSCQVTCYGLKAIGNWCISLRELS 170
           L+ LSMLQS+KLD C VT  GL AIGNWCI+L ELS
Sbjct: 303 LKRLSMLQSVKLDGCAVTSAGLTAIGNWCITLSELS 338


>ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis]
           gi|223534001|gb|EEF35723.1| F-box protein, atfbl3,
           putative [Ricinus communis]
          Length = 669

 Score = 61.2 bits (147), Expect(2) = 2e-18
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 170 LSKCM*VIDEGLSSLVTTNKDLRKLDITCCRKITHISI 57
           LSKC+ V DEGLS LVT ++DLRKLDITCCRKIT +SI
Sbjct: 340 LSKCVGVTDEGLSCLVTKHRDLRKLDITCCRKITDVSI 377



 Score = 58.2 bits (139), Expect(2) = 2e-18
 Identities = 25/36 (69%), Positives = 31/36 (86%)
 Frame = -1

Query: 277 LQNLSMLQSIKLDSCQVTCYGLKAIGNWCISLRELS 170
           L+ LS+LQS+KLD C +T  GLKA+GNWCISL+ELS
Sbjct: 304 LKQLSVLQSVKLDGCMITSAGLKALGNWCISLKELS 339


>ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera]
           gi|297735597|emb|CBI18091.3| unnamed protein product
           [Vitis vinifera]
          Length = 663

 Score = 62.4 bits (150), Expect(2) = 8e-17
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = -3

Query: 170 LSKCM*VIDEGLSSLVTTNKDLRKLDITCCRKITHISIFCVHN 42
           LSKC+ V DEGLSSLV  ++DLRKLD+TCCRKIT +SI  + N
Sbjct: 335 LSKCLGVTDEGLSSLVMKHRDLRKLDVTCCRKITQVSIAYITN 377



 Score = 51.2 bits (121), Expect(2) = 8e-17
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = -1

Query: 277 LQNLSMLQSIKLDSCQVTCYGLKAIGNWCISLRELS 170
           LQ+LSMLQSIKLD C VT  GLK IGN C  LRE+S
Sbjct: 299 LQDLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVS 334


>ref|XP_003516411.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 671

 Score = 60.5 bits (145), Expect(2) = 1e-16
 Identities = 29/43 (67%), Positives = 34/43 (79%)
 Frame = -3

Query: 170 LSKCM*VIDEGLSSLVTTNKDLRKLDITCCRKITHISIFCVHN 42
           LSKC+ V DE LS LV+ +KDLRKLDITCCRKIT +SI  + N
Sbjct: 342 LSKCLGVTDEALSFLVSKHKDLRKLDITCCRKITDVSIASISN 384



 Score = 52.8 bits (125), Expect(2) = 1e-16
 Identities = 27/36 (75%), Positives = 28/36 (77%)
 Frame = -1

Query: 277 LQNLSMLQSIKLDSCQVTCYGLKAIGNWCISLRELS 170
           L  LSMLQSI LD C VT  GL+AIGN CISLRELS
Sbjct: 306 LNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELS 341


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