BLASTX nr result

ID: Panax21_contig00013386 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013386
         (1108 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   310   5e-82
ref|XP_002267315.1| PREDICTED: uncharacterized protein LOC100258...   278   2e-72
gb|ABK94132.1| unknown [Populus trichocarpa]                          271   2e-70
ref|XP_003626470.1| hypothetical protein MTR_7g116270 [Medicago ...   268   1e-69
gb|AFK37234.1| unknown [Lotus japonicus]                              264   3e-68

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score =  310 bits (793), Expect = 5e-82
 Identities = 156/238 (65%), Positives = 187/238 (78%), Gaps = 1/238 (0%)
 Frame = -2

Query: 984 MLKLSSLLQSRNQLFQRTLLGENVRDNLMELGFMYKAGISTARQNF-SDDGKIIDRVFAD 808
           MLK+S LL  RNQL  + L GE V+ ++ +      AG ST RQN  +D GK   RVFA 
Sbjct: 1   MLKVSRLLHPRNQLLHKKLPGECVKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAP 60

Query: 807 YSIYKGKASLSASPRLPKFIRLDSGGIKVDRNGIIMLSFCPAIGERKYDWEKKQRFALSA 628
           YS++KGKA+LSA PRLP F RLDSGG+K++R G+IML+F P++GERKYDWEK+Q FALSA
Sbjct: 61  YSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSA 120

Query: 627 TEVGTLISLGPNDTCEFFHDPSMKSSNAGQVRKTLQVNPLADGSGYFISLSVVNNILKTN 448
           TEVG+LIS+G  D+ EFFHDPSM SSNAGQVRK+L + P ADGSGYFISLSVVNN LKTN
Sbjct: 121 TEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTN 180

Query: 447 ERFSVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQQPTDVEGNPPKVDPRVKSLEWDR 274
           +RF+VPVT AEFAVMRTAFSFALPHIMGWDR+TN+    +  +P KV P++   EWDR
Sbjct: 181 DRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQLMEAEWDR 238


>ref|XP_002267315.1| PREDICTED: uncharacterized protein LOC100258449 [Vitis vinifera]
           gi|297734756|emb|CBI16990.3| unnamed protein product
           [Vitis vinifera]
          Length = 231

 Score =  278 bits (711), Expect = 2e-72
 Identities = 144/239 (60%), Positives = 174/239 (72%), Gaps = 2/239 (0%)
 Frame = -2

Query: 984 MLKLSSLLQSRNQLFQRTLLGE--NVRDNLMELGFMYKAGISTARQNFSDDGKIIDRVFA 811
           M+KL  LLQSR  L +  L G+  ++R+      F  +  +STA  +F+D G   DRV+A
Sbjct: 1   MMKLKQLLQSRTHLSENLLHGKPGDIRNPSWLHAFTSRVSLSTATDHFADKGNYPDRVYA 60

Query: 810 DYSIYKGKASLSASPRLPKFIRLDSGGIKVDRNGIIMLSFCPAIGERKYDWEKKQRFALS 631
            Y +YKGKASL+  P LPKF RLDSGG+KVDR+G++ML F PA+GERKYDWEKKQ FALS
Sbjct: 61  PYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALS 120

Query: 630 ATEVGTLISLGPNDTCEFFHDPSMKSSNAGQVRKTLQVNPLADGSGYFISLSVVNNILKT 451
           A EVG+L+SL P   CEFFHDPSMK+SNAGQVRK+L V  + DG  YF+SLSVVNNI KT
Sbjct: 121 AVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSM-DGGSYFLSLSVVNNIQKT 179

Query: 450 NERFSVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQQPTDVEGNPPKVDPRVKSLEWDR 274
           NER +VP+T AEFAVM+TA SFALPHI+GWDRY NQ+    E  P        +LEWDR
Sbjct: 180 NERLAVPLTAAEFAVMQTACSFALPHILGWDRYMNQKLPRTEATP-------STLEWDR 231


>gb|ABK94132.1| unknown [Populus trichocarpa]
          Length = 229

 Score =  271 bits (694), Expect = 2e-70
 Identities = 142/239 (59%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
 Frame = -2

Query: 984 MLKLSSLLQSRNQLFQRTLLGE--NVRDNLMELGFMYKAGISTARQNFSDDGKIIDRVFA 811
           M+KLS  L      F R  +G+  +VRD        ++A IST  ++      I DRVFA
Sbjct: 1   MMKLSRFLN-----FNRNAVGKPTDVRDGSALHALTFQASISTGGKS-----SIQDRVFA 50

Query: 810 DYSIYKGKASLSASPRLPKFIRLDSGGIKVDRNGIIMLSFCPAIGERKYDWEKKQRFALS 631
            YS++KGKA+LS  P LP F +  SG ++VDR G +ML+F PAIGERKYD+EK+Q+FALS
Sbjct: 51  PYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQKFALS 110

Query: 630 ATEVGTLISLGPNDTCEFFHDPSMKSSNAGQVRKTLQVNPLADGSGYFISLSVVNNILKT 451
           ATEVG+LIS GP D+CEFFHDPSM SSNAGQVRK L + P ADGSGYF+SLSVVNNILKT
Sbjct: 111 ATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKPHADGSGYFVSLSVVNNILKT 170

Query: 450 NERFSVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQQPTDVEGNPPKVDPRVKSLEWDR 274
            ERF+VPVT AEF V++TA SFALPHIMGWDR T   P  +     KVDP++  LEWD+
Sbjct: 171 TERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGTLASKLSKVDPQMPDLEWDK 229


>ref|XP_003626470.1| hypothetical protein MTR_7g116270 [Medicago truncatula]
           gi|355501485|gb|AES82688.1| hypothetical protein
           MTR_7g116270 [Medicago truncatula]
           gi|388497124|gb|AFK36628.1| unknown [Medicago
           truncatula]
          Length = 226

 Score =  268 bits (686), Expect = 1e-69
 Identities = 139/238 (58%), Positives = 174/238 (73%), Gaps = 1/238 (0%)
 Frame = -2

Query: 984 MLKLSSLLQSRNQLFQRTLLGENVRDNLMELGFMYKAGISTA-RQNFSDDGKIIDRVFAD 808
           MLK S +L S +            R++L+E+  +Y    STA   N+S  G   DR+FA 
Sbjct: 5   MLKFSRMLHSSS------------RNHLLEV--LYARDFSTATNNNYSAKGYTSDRIFAP 50

Query: 807 YSIYKGKASLSASPRLPKFIRLDSGGIKVDRNGIIMLSFCPAIGERKYDWEKKQRFALSA 628
           YS+YKGKA+ S SP LP F +LDSG + VDR+G IM+SF PAIGERKYDWEK+Q FALSA
Sbjct: 51  YSVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSA 110

Query: 627 TEVGTLISLGPNDTCEFFHDPSMKSSNAGQVRKTLQVNPLADGSGYFISLSVVNNILKTN 448
           TEVG+LI++GP D+CEFFHDPSMKSSNAGQVRK+L + P    +GYF+SLSVVN++L T 
Sbjct: 111 TEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSLSIKP--HSNGYFVSLSVVNSVLNTK 168

Query: 447 ERFSVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQQPTDVEGNPPKVDPRVKSLEWDR 274
           + FSVPVT AEFAVM+TA SFALPHIMGWDR TNQQ +      PK++ ++  LEW++
Sbjct: 169 DNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSGTVSFQPKMNSQILDLEWEK 226


>gb|AFK37234.1| unknown [Lotus japonicus]
          Length = 235

 Score =  264 bits (675), Expect = 3e-68
 Identities = 138/242 (57%), Positives = 170/242 (70%), Gaps = 5/242 (2%)
 Frame = -2

Query: 984 MLKLSSLLQS--RNQLFQRTLLGENVRDNLMELGFMYKAGISTARQNFSDDGKIIDRVFA 811
           MLKL  +L S  RN + +  +L  +    + +         + AR+ +   G   DRVFA
Sbjct: 1   MLKLLRVLPSTSRNWVLEMEVLSSSRNPQVRDFS-------TAARETYVAKGYTTDRVFA 53

Query: 810 DYSIYKGKASLSASPRLPKFIRLDSGGIKVDRNGIIMLSFCPAIGERKYDWEKKQRFALS 631
            Y +YKGKA++S SP LP F +LDSG + V+R G IM+ F PAIGERKYDWEK+Q+FALS
Sbjct: 54  PYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQKFALS 113

Query: 630 ATEVGTLISLGPNDTCEFFHDPSMKSSNAGQVRKTLQVNPLADGSGYFISLSVVNNILKT 451
           ATEVG+LI++GP D+CEFFHDPSM SSNAGQVRK+L + P A+ SGYF+SL+VVNN+L  
Sbjct: 114 ATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSLTVVNNLLNA 173

Query: 450 NERFSVPVTKAEFAVMRTAFSFALPHIMGWDRYTNQQ---PTDVEGNPPKVDPRVKSLEW 280
            E F+VPVT AEFAVM+TA SFALPHIMGWDR TNQQ   P    G   KVD  V  LEW
Sbjct: 174 KENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDKPVFDLEW 233

Query: 279 DR 274
           D+
Sbjct: 234 DK 235


Top