BLASTX nr result

ID: Panax21_contig00013216 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013216
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270335.1| PREDICTED: protein VERNALIZATION INSENSITIVE...   105   3e-21
ref|XP_003549399.1| PREDICTED: protein VERNALIZATION INSENSITIVE...    98   8e-19
gb|AFD98847.1| vernalization insensitive 3 [Solanum lycopersicum]      97   1e-18
ref|XP_003541436.1| PREDICTED: protein VERNALIZATION INSENSITIVE...    96   4e-18
ref|XP_002531036.1| conserved hypothetical protein [Ricinus comm...    94   9e-18

>ref|XP_002270335.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis
           vinifera]
          Length = 738

 Score =  105 bits (263), Expect = 3e-21
 Identities = 63/121 (52%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
 Frame = +1

Query: 37  SMPTSVNLEDKHSAEGRTTEETSPENGSNTPVQSGMDCVPFVHISEAGLPNTPCKLENLK 216
           SMP  +  ++K S E +  EE S +  +NTPV++GM+CVPFV  SEAGLP TPCKLE  K
Sbjct: 541 SMPKVLKPDNKTSLECQIIEEMSTDKEANTPVRTGMECVPFVGSSEAGLPITPCKLEIFK 600

Query: 217 DGLVRSIRTK-LNKDLDNXXXXXXXXXXKEEEPQDGSSVKKRSAERRGNECSDNG--DKD 387
           DGL R+ R K    DLD+          K +EPQ GSS KKRSAER+  EC+ NG  D+D
Sbjct: 601 DGLGRNGRPKPSTMDLDD-------GSGKGDEPQAGSSSKKRSAERQDEECAANGPSDRD 653

Query: 388 F 390
           F
Sbjct: 654 F 654


>ref|XP_003549399.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]
          Length = 737

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 5/124 (4%)
 Frame = +1

Query: 34  SSMPTS--VNLEDKHSAEGRTTEETSPENGSNTPVQSGMDCVPFVHISEAGLPNTPCKLE 207
           +S+P+S  + LE+KHS E + TE+ S ++G N+P  +G +CVP V  S+ GLPNTPCKLE
Sbjct: 537 ASIPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSKGGLPNTPCKLE 596

Query: 208 NLKDGLVRSIRTKLN-KDLDNXXXXXXXXXXKEEEPQDGSSVKKRSAERR--GNECSDNG 378
            LKDG  ++ R+K + KD +N          K E PQDGS+ KKRS ER+  G   +   
Sbjct: 597 TLKDGPGKNKRSKSSGKDQEN-------VSGKREGPQDGSTSKKRSGERQEEGRVANGFS 649

Query: 379 DKDF 390
           D+DF
Sbjct: 650 DRDF 653


>gb|AFD98847.1| vernalization insensitive 3 [Solanum lycopersicum]
          Length = 739

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
 Frame = +1

Query: 34  SSMPTS--VNLEDKHSAEGRTTEETSPENGSNTPVQSGMDCVPFVHISEAGLPNTPCKLE 207
           +S+P +  +NLE+K  ++ +TTEETS +NGSN P+Q+ ++  PFV   +AGLP TPCK+E
Sbjct: 542 TSLPNTDAINLENKQCSDVQTTEETSTDNGSNAPLQTALEFAPFVGSVDAGLPITPCKME 601

Query: 208 NLKDGLVRSIRTK-LNKDLDNXXXXXXXXXXKEEEPQDGSSVKKRSAERRGNECSDNGDK 384
           N+K  L R  +++  +KDLDN          KE+ PQ G S KKR  E    EC+  GDK
Sbjct: 602 NVKGSLGRKGKSEHCSKDLDN-------GSGKEDGPQVGCSSKKRVGEWH-EECAGTGDK 653

Query: 385 DF 390
           DF
Sbjct: 654 DF 655


>ref|XP_003541436.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]
          Length = 736

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 5/124 (4%)
 Frame = +1

Query: 34  SSMPTS--VNLEDKHSAEGRTTEETSPENGSNTPVQSGMDCVPFVHISEAGLPNTPCKLE 207
           +S+P+S  + LE+KHS E + TE+ S ++G  +P  +G +CVP V  SE GLPNTPCKLE
Sbjct: 536 ASIPSSDVLKLENKHSPEEQITEDMSTDDGLISPALTGRECVPLVGSSEGGLPNTPCKLE 595

Query: 208 NLKDGLVRSIRTKLN-KDLDNXXXXXXXXXXKEEEPQDGSSVKKRSAERR--GNECSDNG 378
            LKDG  ++ R+K + KD +N          K E PQDGS+ KKRS ER+  G   +   
Sbjct: 596 TLKDGPGKNKRSKSSGKDQEN-------VSGKREGPQDGSTSKKRSGERQEEGRVANGFS 648

Query: 379 DKDF 390
           D+DF
Sbjct: 649 DRDF 652


>ref|XP_002531036.1| conserved hypothetical protein [Ricinus communis]
           gi|223529389|gb|EEF31353.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 710

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
 Frame = +1

Query: 7   MLNEERVID--SSMPTS--VNLEDKHSAEGRTTEETSPENGSNTPVQSGMDCVPFVHIS- 171
           +L+EE  +   +SMP      L+++HS E +  +ETS ENGS+ P+ + ++CVPF     
Sbjct: 500 LLDEEHTVQVVTSMPCCDMQKLQNEHSHEDQIVDETSTENGSDAPIHTDLECVPFEGKGN 559

Query: 172 -EAGLPNTPCKLENLKDGLVRSIRTK-LNKDLDNXXXXXXXXXXKEEEPQDGSSVKKRSA 345
            E  LP TPCKL+ +KDG  R  R+K  NKDL N          K EEPQD S+ KKRS 
Sbjct: 560 IETSLPITPCKLDMIKDGQGRHGRSKSSNKDLLN-------GTGKGEEPQDASTSKKRSG 612

Query: 346 ERRGNECSDNGDKDF 390
           ERR  EC+ + D+DF
Sbjct: 613 ERRDEECT-HSDRDF 626


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