BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013175
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...    57   6e-09
ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...    55   1e-08
emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]      55   1e-08
ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3...    58   7e-07
ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3...    58   7e-07

>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score = 56.6 bits (135), Expect(2) = 6e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -2

Query: 387 TQTLWELDRFMTSLKKLVSKTKRQALMGNNSAAPTATTDTDELVT 253
           T+TLWELDRF+T+ KK+VSKTKRQALM NN   P+A+       T
Sbjct: 459 TETLWELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATT 503



 Score = 28.5 bits (62), Expect(2) = 6e-09
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 166 FPPVEIEKYDGGHGRDNGTKNGIAS 92
           FPPVEIEK +GG GRD     G +S
Sbjct: 544 FPPVEIEKDEGG-GRDQENGGGGSS 567


>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
           gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
           protein Virp1a [Solanum lycopersicum]
           gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
           protein Virp1b [Solanum lycopersicum]
           gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
           protein Virp1c [Solanum lycopersicum]
           gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
           protein Virp1d [Solanum lycopersicum]
           gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
           gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score = 55.1 bits (131), Expect(2) = 1e-08
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 6/48 (12%)
 Frame = -2

Query: 387 TQTLWELDRFMTSLKKLVSKTKRQALMGN------NSAAPTATTDTDE 262
           T+TLWELDRF+T+ KK+VSKTKRQALM N      ++AA  ATT   E
Sbjct: 459 TETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAE 506



 Score = 28.9 bits (63), Expect(2) = 1e-08
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -1

Query: 166 FPPVEIEKYDGGHGRD--NGTKNGIAS 92
           FPPVEIEK +GG GRD  NG   G +S
Sbjct: 543 FPPVEIEKDEGG-GRDQENGGGGGSSS 568


>emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]
          Length = 313

 Score = 55.1 bits (131), Expect(2) = 1e-08
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 6/48 (12%)
 Frame = -2

Query: 387 TQTLWELDRFMTSLKKLVSKTKRQALMGN------NSAAPTATTDTDE 262
           T+TLWELDRF+T+ KK+VSKTKRQALM N      ++AA  ATT   E
Sbjct: 170 TETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAE 217



 Score = 28.9 bits (63), Expect(2) = 1e-08
 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -1

Query: 166 FPPVEIEKYDGGHGRD--NGTKNGIAS 92
           FPPVEIEK +GG GRD  NG   G +S
Sbjct: 254 FPPVEIEKDEGG-GRDQENGGGGGSSS 279


>ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3-like [Glycine max]
          Length = 724

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = -1

Query: 523 GFVERKPTLIGSLTVREFFYYSALLQLPDFF*KMMKLSSIFRNALDTDSLG 371
           G+VER+ TLIGSLTVREF YYSALLQLP FF    +  S+  +A+   SLG
Sbjct: 185 GYVERETTLIGSLTVREFLYYSALLQLPGFF---CQKKSVVEDAIHAMSLG 232


>ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3-like [Glycine max]
          Length = 724

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = -1

Query: 523 GFVERKPTLIGSLTVREFFYYSALLQLPDFF*KMMKLSSIFRNALDTDSLG 371
           G+VER+ TLIGSLTVREF YYSALLQLP FF    +  S+  +A+   SLG
Sbjct: 185 GYVERETTLIGSLTVREFLYYSALLQLPGFF---CQKKSVVEDAIHAMSLG 232