BLASTX nr result

ID: Panax21_contig00013113 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013113
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276643.1| PREDICTED: tubulin gamma-1 chain [Vitis vini...   313   4e-83
gb|ABF19052.1| gamma-tubulin, partial [Nicotiana tabacum]             311   1e-82
emb|CAC00547.1| gamma tubulin [Nicotiana tabacum]                     311   1e-82
ref|XP_004133834.1| PREDICTED: tubulin gamma-2 chain-like [Cucum...   308   1e-81
ref|XP_002320847.1| tubulin gamma-1 chain, at3g61650-like protei...   308   1e-81

>ref|XP_002276643.1| PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
           gi|297745396|emb|CBI40476.3| unnamed protein product
           [Vitis vinifera]
          Length = 474

 Score =  313 bits (801), Expect = 4e-83
 Identities = 153/166 (92%), Positives = 159/166 (95%)
 Frame = -3

Query: 886 ARTKEASQAKYISILNIIQGEVDPTQVHDSLQRIRERKLVNFIEWGPASIQVALSRKSPY 707
           ARTKEASQAKYISILNIIQGEVDPTQVH+SLQRIRERKLVNFIEWGPASIQVALSRKSPY
Sbjct: 309 ARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPY 368

Query: 706 VQTAHRVSGLMLASYTGIRHLFSKCLSQYSLLRKRQAFLDKYRSFPLFEDNDLSEFDESR 527
           VQTAHRVSGLMLAS+T IRHLFSKCLSQY  LRK+QAFLD YR FP+F DNDLSEFDESR
Sbjct: 369 VQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR 428

Query: 526 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGTVDPKLAI 389
           DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNA+G VDPKLA+
Sbjct: 429 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNASGAVDPKLAV 474


>gb|ABF19052.1| gamma-tubulin, partial [Nicotiana tabacum]
          Length = 464

 Score =  311 bits (797), Expect = 1e-82
 Identities = 151/166 (90%), Positives = 160/166 (96%)
 Frame = -3

Query: 886 ARTKEASQAKYISILNIIQGEVDPTQVHDSLQRIRERKLVNFIEWGPASIQVALSRKSPY 707
           ARTKEASQAKYISILNIIQGEVDPTQVH+SLQRIRERKLVNFI+WGPASIQVALSRKSPY
Sbjct: 299 ARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSRKSPY 358

Query: 706 VQTAHRVSGLMLASYTGIRHLFSKCLSQYSLLRKRQAFLDKYRSFPLFEDNDLSEFDESR 527
           VQTAHRVSGLMLAS+TGIRHLFSKCLSQY  LRKRQAFLD YR+ P F DNDLSEFDESR
Sbjct: 359 VQTAHRVSGLMLASHTGIRHLFSKCLSQYDKLRKRQAFLDNYRNHPTFADNDLSEFDESR 418

Query: 526 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGTVDPKLAI 389
           D+IESLVDEYKACESPDYIKWGMEDPDH+LTGEGNA+GTVDPKL++
Sbjct: 419 DVIESLVDEYKACESPDYIKWGMEDPDHVLTGEGNASGTVDPKLSL 464


>emb|CAC00547.1| gamma tubulin [Nicotiana tabacum]
          Length = 474

 Score =  311 bits (797), Expect = 1e-82
 Identities = 151/166 (90%), Positives = 160/166 (96%)
 Frame = -3

Query: 886 ARTKEASQAKYISILNIIQGEVDPTQVHDSLQRIRERKLVNFIEWGPASIQVALSRKSPY 707
           ARTKEASQAKYISILNIIQGEVDPTQVH+SLQRIRERKLVNFI+WGPASIQVALSRKSPY
Sbjct: 309 ARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSRKSPY 368

Query: 706 VQTAHRVSGLMLASYTGIRHLFSKCLSQYSLLRKRQAFLDKYRSFPLFEDNDLSEFDESR 527
           VQTAHRVSGLMLAS+TGIRHLFSKCLSQY  LRKRQAFLD YR+ P F DNDLSEFDESR
Sbjct: 369 VQTAHRVSGLMLASHTGIRHLFSKCLSQYDKLRKRQAFLDNYRNHPTFADNDLSEFDESR 428

Query: 526 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGTVDPKLAI 389
           D+IESLVDEYKACESPDYIKWGMEDPDH+LTGEGNA+GTVDPKL++
Sbjct: 429 DVIESLVDEYKACESPDYIKWGMEDPDHVLTGEGNASGTVDPKLSL 474


>ref|XP_004133834.1| PREDICTED: tubulin gamma-2 chain-like [Cucumis sativus]
           gi|449480269|ref|XP_004155846.1| PREDICTED: tubulin
           gamma-2 chain-like [Cucumis sativus]
          Length = 474

 Score =  308 bits (789), Expect = 1e-81
 Identities = 151/166 (90%), Positives = 157/166 (94%)
 Frame = -3

Query: 886 ARTKEASQAKYISILNIIQGEVDPTQVHDSLQRIRERKLVNFIEWGPASIQVALSRKSPY 707
           ARTKEASQAKYISILNIIQGEVDPTQVH+SLQRIRERKLVNFIEWGPASIQVALSRKSPY
Sbjct: 309 ARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPY 368

Query: 706 VQTAHRVSGLMLASYTGIRHLFSKCLSQYSLLRKRQAFLDKYRSFPLFEDNDLSEFDESR 527
           VQTAHRVSGLMLAS+T IRHLFSKCLSQY  LRK+QAFLD YR FP+F DNDLSEFDESR
Sbjct: 369 VQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR 428

Query: 526 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGTVDPKLAI 389
           DIIESLVDEYKACESPDYIKWGMEDPD ILTGEGNA+GT DP LA+
Sbjct: 429 DIIESLVDEYKACESPDYIKWGMEDPDQILTGEGNASGTADPSLAV 474


>ref|XP_002320847.1| tubulin gamma-1 chain, at3g61650-like protein [Populus trichocarpa]
           gi|222861620|gb|EEE99162.1| tubulin gamma-1 chain,
           at3g61650-like protein [Populus trichocarpa]
          Length = 474

 Score =  308 bits (788), Expect = 1e-81
 Identities = 152/166 (91%), Positives = 158/166 (95%)
 Frame = -3

Query: 886 ARTKEASQAKYISILNIIQGEVDPTQVHDSLQRIRERKLVNFIEWGPASIQVALSRKSPY 707
           ARTKEASQAKYISILNIIQGEVDPTQVH+SLQRIRERKLVNFIEWGPASIQVALSRKSPY
Sbjct: 309 ARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPY 368

Query: 706 VQTAHRVSGLMLASYTGIRHLFSKCLSQYSLLRKRQAFLDKYRSFPLFEDNDLSEFDESR 527
           VQTAHRVSGLMLAS+T IRHLFSKCLSQY  LRK+QAFLD YR FP+F DNDLSEFDESR
Sbjct: 369 VQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESR 428

Query: 526 DIIESLVDEYKACESPDYIKWGMEDPDHILTGEGNATGTVDPKLAI 389
           DIIESLVDEYKACESPDYIKWGMEDPD++LT EGNA GTVDPKLAI
Sbjct: 429 DIIESLVDEYKACESPDYIKWGMEDPDNLLTEEGNAKGTVDPKLAI 474


Top