BLASTX nr result

ID: Panax21_contig00011995 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00011995
         (673 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634742.1| PREDICTED: LOW QUALITY PROTEIN: proteasome a...   122   5e-33
emb|CBI39809.3| unnamed protein product [Vitis vinifera]              122   5e-33
ref|XP_002533724.1| conserved hypothetical protein [Ricinus comm...   120   6e-32
ref|XP_002330537.1| predicted protein [Populus trichocarpa] gi|2...   122   1e-31
ref|XP_002300583.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-31

>ref|XP_003634742.1| PREDICTED: LOW QUALITY PROTEIN: proteasome activator complex subunit
            4-like [Vitis vinifera]
          Length = 1813

 Score =  122 bits (307), Expect(2) = 5e-33
 Identities = 61/85 (71%), Positives = 66/85 (77%)
 Frame = +1

Query: 79   LAGKSLLKMMKRWPPIISNCVLTLTENLRNPKAPEYAVLGSCAVLGTQTVLKRLTTDPKA 258
            LAGK+LLKM+KRWP +IS CVLTLTEN+RNP +PEYAVLGSCAVL TQTVLK LT DPKA
Sbjct: 1004 LAGKALLKMIKRWPSMISKCVLTLTENIRNPNSPEYAVLGSCAVLATQTVLKHLTMDPKA 1063

Query: 259  XXXXXXXXXXXXHHESLKAQKAITE 333
                        HHESLKAQKAI E
Sbjct: 1064 FSSFLLGILSSSHHESLKAQKAINE 1088



 Score = 44.3 bits (103), Expect(2) = 5e-33
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +2

Query: 332  RRIYSSPNNSSDGKDFAILVSEIRSMSFESTNLHGRTQLV 451
            R I+ + +N SDG DF  LVS+I SMSF+ST LH R  L+
Sbjct: 1102 RSIFKTLDNHSDGPDFTNLVSQIGSMSFDSTGLHWRYNLM 1141


>emb|CBI39809.3| unnamed protein product [Vitis vinifera]
          Length = 1808

 Score =  122 bits (307), Expect(2) = 5e-33
 Identities = 61/85 (71%), Positives = 66/85 (77%)
 Frame = +1

Query: 79   LAGKSLLKMMKRWPPIISNCVLTLTENLRNPKAPEYAVLGSCAVLGTQTVLKRLTTDPKA 258
            LAGK+LLKM+KRWP +IS CVLTLTEN+RNP +PEYAVLGSCAVL TQTVLK LT DPKA
Sbjct: 999  LAGKALLKMIKRWPSMISKCVLTLTENIRNPNSPEYAVLGSCAVLATQTVLKHLTMDPKA 1058

Query: 259  XXXXXXXXXXXXHHESLKAQKAITE 333
                        HHESLKAQKAI E
Sbjct: 1059 FSSFLLGILSSSHHESLKAQKAINE 1083



 Score = 44.3 bits (103), Expect(2) = 5e-33
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +2

Query: 332  RRIYSSPNNSSDGKDFAILVSEIRSMSFESTNLHGRTQLV 451
            R I+ + +N SDG DF  LVS+I SMSF+ST LH R  L+
Sbjct: 1097 RSIFKTLDNHSDGPDFTNLVSQIGSMSFDSTGLHWRYNLM 1136


>ref|XP_002533724.1| conserved hypothetical protein [Ricinus communis]
            gi|223526362|gb|EEF28655.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1794

 Score =  120 bits (302), Expect(2) = 6e-32
 Identities = 61/85 (71%), Positives = 65/85 (76%)
 Frame = +1

Query: 79   LAGKSLLKMMKRWPPIISNCVLTLTENLRNPKAPEYAVLGSCAVLGTQTVLKRLTTDPKA 258
            LAGKSLLKM+KRWP +IS CVL+LTENLRNP +PEYAVLGSCAVL TQ VLK LTTD KA
Sbjct: 981  LAGKSLLKMLKRWPSMISKCVLSLTENLRNPNSPEYAVLGSCAVLSTQAVLKHLTTDAKA 1040

Query: 259  XXXXXXXXXXXXHHESLKAQKAITE 333
                        HHESLKAQKAI E
Sbjct: 1041 LSSFLLGILSSSHHESLKAQKAINE 1065



 Score = 42.7 bits (99), Expect(2) = 6e-32
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 332  RRIYSSPNNSSDGKDFAILVSEIRSMSFESTNLHGRTQLV 451
            R I+ + ++  DG DFA LVS+I SMSF+ST LH R  L+
Sbjct: 1079 RAIFKASDDLRDGSDFADLVSQIGSMSFDSTGLHWRYNLM 1118


>ref|XP_002330537.1| predicted protein [Populus trichocarpa] gi|222872095|gb|EEF09226.1|
           predicted protein [Populus trichocarpa]
          Length = 881

 Score =  122 bits (305), Expect(2) = 1e-31
 Identities = 61/85 (71%), Positives = 66/85 (77%)
 Frame = +1

Query: 79  LAGKSLLKMMKRWPPIISNCVLTLTENLRNPKAPEYAVLGSCAVLGTQTVLKRLTTDPKA 258
           LAGKSLLKM+KRWP +IS CVL+LTE+LRNP +PEYAVLGSC VL TQTVLK LTTDPKA
Sbjct: 48  LAGKSLLKMIKRWPSMISKCVLSLTEHLRNPSSPEYAVLGSCTVLSTQTVLKHLTTDPKA 107

Query: 259 XXXXXXXXXXXXHHESLKAQKAITE 333
                       HHESLKAQKAI E
Sbjct: 108 LSSFLLGILSSSHHESLKAQKAINE 132



 Score = 40.4 bits (93), Expect(2) = 1e-31
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 332 RRIYSSPNNSSDGKDFAILVSEIRSMSFESTNLHGRTQLV 451
           R I+ + +N  DG +FA LVS+I SMSF+S+ LH R  L+
Sbjct: 146 RSIFRTSDNHIDGPNFADLVSQIGSMSFDSSGLHWRYNLM 185


>ref|XP_002300583.1| predicted protein [Populus trichocarpa] gi|222847841|gb|EEE85388.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score =  120 bits (301), Expect(2) = 1e-31
 Identities = 59/85 (69%), Positives = 66/85 (77%)
 Frame = +1

Query: 79  LAGKSLLKMMKRWPPIISNCVLTLTENLRNPKAPEYAVLGSCAVLGTQTVLKRLTTDPKA 258
           LAGKSLLKM+KRWP +ISNCVL+LTE+L+NP +PEYAVLGSC +L  QTVLK LTTDPKA
Sbjct: 105 LAGKSLLKMIKRWPSMISNCVLSLTEHLKNPSSPEYAVLGSCTILSMQTVLKHLTTDPKA 164

Query: 259 XXXXXXXXXXXXHHESLKAQKAITE 333
                       HHESLKAQKAI E
Sbjct: 165 LSSFLLGILSSSHHESLKAQKAINE 189



 Score = 42.0 bits (97), Expect(2) = 1e-31
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 332 RRIYSSPNNSSDGKDFAILVSEIRSMSFESTNLHGRTQLV 451
           R I+ + +N  DG +FA LVS+I SMSF+ST LH R  L+
Sbjct: 203 RSIFRTSDNHIDGPNFADLVSQIGSMSFDSTGLHWRYNLM 242


Top