BLASTX nr result

ID: Panax21_contig00011990 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00011990
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional ...   430   e-118
ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP...   425   e-117
ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP...   420   e-115
emb|CAN83958.1| hypothetical protein VITISV_039907 [Vitis vinifera]   418   e-115
ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional ...   414   e-113

>ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
           [Vitis vinifera]
          Length = 417

 Score =  430 bits (1105), Expect = e-118
 Identities = 208/269 (77%), Positives = 225/269 (83%)
 Frame = -1

Query: 809 EVVSAKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLMPNVEQNFRLNWASFGVGE 630
           EVVS KVIRNK TGQ +GYGFIE    AAAER LQ YNGTLMPN EQNFRLNWA+ G GE
Sbjct: 115 EVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGE 174

Query: 629 KRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGD 450
           +R DD  D+TIFVGDLA+DVTDY+LQETFR HYPSV+GAKVVTDR T R+KGYGFV+FGD
Sbjct: 175 RRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGD 234

Query: 449 ESEQLRAMTEMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNN 270
           E EQLRAM EMNG  CSTRPMRIGPAA KK      G QQ+QKA +QNTQG Q E DPNN
Sbjct: 235 EGEQLRAMNEMNGMFCSTRPMRIGPAATKKP----VGGQQFQKASFQNTQGNQGESDPNN 290

Query: 269 TTIFVGGLDSNATDDLLRQVFGQYGQLVHVKIPVGKRCGFVQFADRGCAEEALRMLNGTQ 90
           TTIFVGGLDSN TDD LRQVF QYG+LVHVKIPVGKRCGFVQFA+R CAE+AL  LNGTQ
Sbjct: 291 TTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQ 350

Query: 89  LGGQNVRLSWGRSPSNKQSQVDPNQWNGG 3
           LG Q++RLSWGRSPSNKQ+Q D  QWNGG
Sbjct: 351 LGAQSIRLSWGRSPSNKQAQPDQAQWNGG 379


>ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
           sativus]
          Length = 404

 Score =  425 bits (1092), Expect = e-117
 Identities = 209/269 (77%), Positives = 227/269 (84%)
 Frame = -1

Query: 809 EVVSAKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLMPNVEQNFRLNWASFGVGE 630
           EV S KVIRNK TGQS+GYGFIEF+   AAER LQ YNGT MPN  QNFRLNWAS   GE
Sbjct: 91  EVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWAS--AGE 148

Query: 629 KRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGD 450
           KR DD  D+TIFVGDLA DVTDY+LQETFRA Y SV+GAKVV DR T RTKGYGFVKFGD
Sbjct: 149 KRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGD 208

Query: 449 ESEQLRAMTEMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNN 270
           ESEQ+RAMTEMNG  CS+RPMRIGPAANK ++G     QQ+ K  YQN QG Q+E+DPNN
Sbjct: 209 ESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSG----GQQFSKTSYQNPQGAQNENDPNN 264

Query: 269 TTIFVGGLDSNATDDLLRQVFGQYGQLVHVKIPVGKRCGFVQFADRGCAEEALRMLNGTQ 90
           TTIFVG LD+N TD+ LRQVFGQYG+LVHVKIPVGKRCGFVQFADR CAEEALR+LNGTQ
Sbjct: 265 TTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRCGFVQFADRNCAEEALRVLNGTQ 324

Query: 89  LGGQNVRLSWGRSPSNKQSQVDPNQWNGG 3
           +GGQN+RLSWGRSPSNKQ Q DPNQWNGG
Sbjct: 325 IGGQNIRLSWGRSPSNKQPQADPNQWNGG 353



 Score = 62.8 bits (151), Expect = 9e-08
 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
 Frame = -1

Query: 602 TIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGDESEQLRAMT 423
           T+++GDL   + +  +   F AH   V   KV+ ++ T +++GYGF++F       R + 
Sbjct: 67  TLWIGDLQYWMDENYIFNCF-AHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQ 125

Query: 422 EMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNNTTIFVGGLD 243
             NG                  T    G+Q ++      + G + +DD  + TIFVG L 
Sbjct: 126 TYNG------------------TAMPNGAQNFRL--NWASAGEKRQDDSPDYTIFVGDLA 165

Query: 242 SNATDDLLRQVF-GQYGQLVHVKIPVG------KRCGFVQFADRGCAEEALRMLNGTQL- 87
            + TD +L++ F  +Y  +   K+ +       K  GFV+F D      A+  +NG    
Sbjct: 166 GDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCS 225

Query: 86  ---------------GGQNVRLSWGRSPSNKQSQVDPN 18
                          GGQ    +  ++P   Q++ DPN
Sbjct: 226 SRPMRIGPAANKNTSGGQQFSKTSYQNPQGAQNENDPN 263


>ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
           sativus] gi|449472157|ref|XP_004153511.1| PREDICTED:
           polyadenylate-binding protein RBP45-like [Cucumis
           sativus]
          Length = 408

 Score =  420 bits (1079), Expect = e-115
 Identities = 207/269 (76%), Positives = 225/269 (83%)
 Frame = -1

Query: 809 EVVSAKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLMPNVEQNFRLNWASFGVGE 630
           EV S KVIRNK TGQS+GYGFIEF+   AAER LQ YNGT MPN  QNFRLNWAS   GE
Sbjct: 91  EVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWAS--AGE 148

Query: 629 KRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGD 450
           KR DD  D+TIFVGDLA DVTDY+LQETFRA Y SV+GAKVV DR T RTKGYGFVKFGD
Sbjct: 149 KRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGD 208

Query: 449 ESEQLRAMTEMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNN 270
           ESEQ+RAMTEMNG  CS+RPMRIGPAANK ++G    SQQ+ K  YQN  GTQ+E+DPNN
Sbjct: 209 ESEQIRAMTEMNGVHCSSRPMRIGPAANKNTSG----SQQFSKTSYQNPPGTQNENDPNN 264

Query: 269 TTIFVGGLDSNATDDLLRQVFGQYGQLVHVKIPVGKRCGFVQFADRGCAEEALRMLNGTQ 90
           TTIFVG LDSN TD+ LRQVF QYG+LVHVKIP GKRCGFVQF+DR CAEEALR+LNGT 
Sbjct: 265 TTIFVGNLDSNVTDEHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRSCAEEALRILNGTP 324

Query: 89  LGGQNVRLSWGRSPSNKQSQVDPNQWNGG 3
           +GGQN+RLSWGRSPSNKQ Q DPNQWNGG
Sbjct: 325 IGGQNIRLSWGRSPSNKQPQADPNQWNGG 353



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 7/198 (3%)
 Frame = -1

Query: 602 TIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGDESEQLRAMT 423
           T+++GDL   + +  +   F AH   V   KV+ ++ T +++GYGF++F       R + 
Sbjct: 67  TLWIGDLQYWMDENYIFNCF-AHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQ 125

Query: 422 EMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNNTTIFVGGLD 243
             NG                  T    G+Q ++      + G + +DD  + TIFVG L 
Sbjct: 126 TYNG------------------TAMPNGAQNFRL--NWASAGEKRQDDSPDYTIFVGDLA 165

Query: 242 SNATDDLLRQVF-GQYGQLVHVKIPVG------KRCGFVQFADRGCAEEALRMLNGTQLG 84
            + TD +L++ F  +Y  +   K+ +       K  GFV+F D      A+  +NG    
Sbjct: 166 GDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCS 225

Query: 83  GQNVRLSWGRSPSNKQSQ 30
            + +R+    + +   SQ
Sbjct: 226 SRPMRIGPAANKNTSGSQ 243


>emb|CAN83958.1| hypothetical protein VITISV_039907 [Vitis vinifera]
          Length = 410

 Score =  418 bits (1075), Expect = e-115
 Identities = 204/269 (75%), Positives = 220/269 (81%)
 Frame = -1

Query: 809 EVVSAKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLMPNVEQNFRLNWASFGVGE 630
           EVVS KVIRNK TGQ +GYGFIE    AAAER LQ YNGTLMPN EQNFRLNWA+ G GE
Sbjct: 100 EVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGE 159

Query: 629 KRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGD 450
           +R DD  D+TIFVGDLA+DVTDY+LQETFR HYPSV+GAKVVTDR T R+KGYGFV+FGD
Sbjct: 160 RRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGD 219

Query: 449 ESEQLRAMTEMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNN 270
           E EQLRAM EMNG  CSTRPMRIGPAA KK  G          A +QNTQG Q E DPNN
Sbjct: 220 EGEQLRAMNEMNGMFCSTRPMRIGPAATKKPVG----------ASFQNTQGXQGESDPNN 269

Query: 269 TTIFVGGLDSNATDDLLRQVFGQYGQLVHVKIPVGKRCGFVQFADRGCAEEALRMLNGTQ 90
           TTIFVGGLDSN TDD LRQVF QYG+LVHVKIPVGKRCGFVQFA+R CAE+AL  LNGTQ
Sbjct: 270 TTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQ 329

Query: 89  LGGQNVRLSWGRSPSNKQSQVDPNQWNGG 3
           LG Q++RLSWGRSPSNKQ+Q D  QWNGG
Sbjct: 330 LGAQSIRLSWGRSPSNKQAQPDQAQWNGG 358


>ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
           [Glycine max]
          Length = 402

 Score =  414 bits (1064), Expect = e-113
 Identities = 203/268 (75%), Positives = 221/268 (82%)
 Frame = -1

Query: 809 EVVSAKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLMPNVEQNFRLNWASFGVGE 630
           E+ S KVIRNK T QS+GYGFIEF + A AER LQ YNGT+MPN  QNFRLNWA+F  GE
Sbjct: 90  ELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGE 149

Query: 629 KRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGD 450
           +R DD  D TIFVGDLAADVTDY+LQETFRA YPS +GAKVV DR T RTKGYGFV+FGD
Sbjct: 150 RRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGD 209

Query: 449 ESEQLRAMTEMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNN 270
           ESEQ+RAM+EM G LCSTRPMRIGPA+NK  +     +Q   KA YQN QG Q+E DPNN
Sbjct: 210 ESEQVRAMSEMQGVLCSTRPMRIGPASNKNPS-----TQSQPKASYQNPQGAQNEHDPNN 264

Query: 269 TTIFVGGLDSNATDDLLRQVFGQYGQLVHVKIPVGKRCGFVQFADRGCAEEALRMLNGTQ 90
           TTIFVG LD N TDD LRQVFGQYG+LVHVKIP GKRCGFVQFADR CAEEALR+LNGT 
Sbjct: 265 TTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTL 324

Query: 89  LGGQNVRLSWGRSPSNKQSQVDPNQWNG 6
           LGGQNVRLSWGRSPSNKQ+Q D NQWNG
Sbjct: 325 LGGQNVRLSWGRSPSNKQAQPDANQWNG 352



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 7/201 (3%)
 Frame = -1

Query: 602 TIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRTKGYGFVKFGDESEQLRAMT 423
           T+++GDL   + +  L   F AH   +   KV+ ++ TS+++GYGF++F   +   R + 
Sbjct: 66  TLWIGDLQYWMDENYLYTCF-AHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQ 124

Query: 422 EMNGQLCSTRPMRIGPAANKKSTGTGTGSQQYQKAPYQNTQGTQSEDDPNNTTIFVGGLD 243
             NG +                     G Q ++      + G +  DD  + TIFVG L 
Sbjct: 125 TYNGTIMP------------------NGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLA 166

Query: 242 SNATDDLLRQVF-GQYGQLVHVKIPVG------KRCGFVQFADRGCAEEALRMLNGTQLG 84
           ++ TD LL++ F  +Y      K+ +       K  GFV+F D      A+  + G    
Sbjct: 167 ADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQGVLCS 226

Query: 83  GQNVRLSWGRSPSNKQSQVDP 21
            + +R+    S  N  +Q  P
Sbjct: 227 TRPMRIG-PASNKNPSTQSQP 246



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
 Frame = -1

Query: 797 AKVIRNKSTGQSDGYGFIEFVNHAAAERNLQAYNGTLM--------------PNVEQNFR 660
           AKV+ ++ TG++ GYGF+ F + +   R +    G L               P+ +   +
Sbjct: 188 AKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQGVLCSTRPMRIGPASNKNPSTQSQPK 247

Query: 659 LNWASFGVGEKRPDDVADFTIFVGDLAADVTDYMLQETFRAHYPSVRGAKVVTDRATSRT 480
            ++ +   G +   D  + TIFVG+L  +VTD  L++ F   Y  +   K+         
Sbjct: 248 ASYQN-PQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVF-GQYGELVHVKIPAG------ 299

Query: 479 KGYGFVKFGDESEQLRAMTEMNGQLCSTRPMRIG-----------PAANKKSTGTGTGSQ 333
           K  GFV+F D S    A+  +NG L   + +R+            P AN+ +   G G  
Sbjct: 300 KRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGGGYY 359

Query: 332 QYQKAPYQNTQGTQSEDDPN 273
            Y +  Y+N     +  DPN
Sbjct: 360 GYAQGGYENYGYAPAGQDPN 379


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