BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00011948
         (1668 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containi...   437   e-143
ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containi...   510   e-142
ref|NP_174012.1| pentatricopeptide repeat-containing protein [Ar...   430   e-118
ref|XP_002522400.1| pentatricopeptide repeat-containing protein,...   425   e-116
ref|XP_002890625.1| pentatricopeptide repeat-containing protein ...   424   e-116

>ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
            mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  437 bits (1123), Expect(2) = e-143
 Identities = 212/388 (54%), Positives = 282/388 (72%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            MLRGYS S+  K+A V+FN +RN + + D+F+F++TLK+CA  LAI  G  +H IV  SG
Sbjct: 95   MLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHGIVHKSG 154

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
              +F +V N LLH Y  C +I+DAH+LF++ SQ  DLVSWNTLM GYLR  +P VVLD F
Sbjct: 155  HGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWNTLMDGYLRASQPIVVLDTF 214

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
            +Q+   G+     T+LSV SA  D G+T  G  L+G+CIK G   +  V T L+ MYGK 
Sbjct: 215  RQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKLGLGSNLRVVTCLIDMYGKF 274

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
            G++D    +F+EV  KDV++WNCL+D YAK+GL+++++A L  MKLE ++PNSSTLAGL+
Sbjct: 275  GDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLI 334

Query: 948  SACATSGAFAVGQCIHNYVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVK 769
            SACATSGA + G+ + NY +   + LD VLGT L+ MY K G L  AID+FD+MK KDVK
Sbjct: 335  SACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMYAKFGFLDKAIDIFDKMKNKDVK 394

Query: 768  SWTAMILGYGMHGDAKDAIMMFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMM 589
            +WTAMI GYG HG  +  +   ++MEEEGF+ NE+TFLAVL++ SHGG+V EG+  F+ M
Sbjct: 395  TWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFLAVLNAYSHGGIVAEGMKCFKRM 454

Query: 588  IQEYGLTPKVEHYGCMIDLLDRAGLLEK 505
            + EYG+TPK+EHYGC+IDLL RAGLLE+
Sbjct: 455  VYEYGITPKIEHYGCIIDLLGRAGLLEE 482



 Score = 99.4 bits (246), Expect(2) = e-143
 Identities = 55/113 (48%), Positives = 73/113 (64%), Gaps = 6/113 (5%)
 Frame = -3

Query: 529 GSCRVAREAHNLIKSLP-IEGDATAWRALLAACRVHGNVDLGERVKKALEETYGEYPADS 353
           G   +  EAH LIKSLP  +GD T WR LLAACRV+G+V+LGE VK+ L +   E+PADS
Sbjct: 475 GRAGLLEEAHKLIKSLPSTKGDITGWRTLLAACRVYGDVELGETVKRKLVDLNDEHPADS 534

Query: 352 IVLSSTYAVAGRMTGHKTTYGTEEGKVLKNEENRS-----LGVKEAGRSTIEL 209
           ++LSSTYA+AGR++ +      +EG  +K     S       +KEAG S IE+
Sbjct: 535 MLLSSTYAIAGRLSDYTQYQLRKEGNKVKEANGSSQVQIEKAIKEAGCSVIEM 587



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 1/252 (0%)
 Frame = -1

Query: 1257 VLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEVDVKD 1078
            +LS    C  TSK   +H Y +K    LD    + L+       +I     +F E+   +
Sbjct: 31   LLSLLESCNGTSKISQIHCYMVKTALDLDPFTLSKLLA--SAILDIKYAASIFREIRNPN 88

Query: 1077 VVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHN 898
            + ++N ++ GY+ S   +++  +   ++ +   P+  +    L ACA   A  VG+ IH 
Sbjct: 89   LFMFNTMLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKACARELAIHVGKGIHG 148

Query: 897  YVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRM-KRKDVKSWTAMILGYGMHGDAK 721
             V +    L   +   LL  Y  C  +++A  +FD + +R D+ SW  ++ GY       
Sbjct: 149  IVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVSWNTLMDGYLRASQPI 208

Query: 720  DAIMMFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMMIQEYGLTPKVEHYGCM 541
              +  F QM   G   N  T L+V S+    G   +G S +   I + GL   +    C+
Sbjct: 209  VVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCI-KLGLGSNLRVVTCL 267

Query: 540  IDLLDRAGLLEK 505
            ID+  + G L++
Sbjct: 268  IDMYGKFGDLDE 279



 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 58/255 (22%), Positives = 115/255 (45%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            ++  Y+ +   K+A+   + M+   +  +  T    + +CA   A+ TG  + +     G
Sbjct: 298  LIDNYAKNGLIKKAVASLHLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEG 357

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
            LD+ + +  TL+ +Y   G ++ A  +F D  + +D+ +W  ++ GY    +   V++  
Sbjct: 358  LDLDVVLGTTLIGMYAKFGFLDKAIDIF-DKMKNKDVKTWTAMITGYGDHGQTRKVMETL 416

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
             ++  +G +    T L+VL+A S  G  ++G      C K            +V  YG T
Sbjct: 417  YRMEEEGFRPNEITFLAVLNAYSHGGIVAEGM----KCFKR-----------MVYEYGIT 461

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
              I+                + C++D   ++GLLEE+  L++S  L S + + +    LL
Sbjct: 462  PKIEH---------------YGCIIDLLGRAGLLEEAHKLIKS--LPSTKGDITGWRTLL 504

Query: 948  SACATSGAFAVGQCI 904
            +AC   G   +G+ +
Sbjct: 505  AACRVYGDVELGETV 519


>ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
            mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  510 bits (1314), Expect = e-142
 Identities = 249/398 (62%), Positives = 307/398 (77%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            MLRGYSIS +PK+A V+F  +R   ++LDQF+F+ TLK+CA  LA  TG  +H +V+ SG
Sbjct: 98   MLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGVVVRSG 157

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
              +F NVKN LLH YCVCGRI DAHQLF++   + DLVSWNTL+GGYL+V  P +V  LF
Sbjct: 158  HGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLF 217

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
             ++   G+K   TT+ SVL A  D G+   G  LHG+CIK GFC D NVATAL+ MY   
Sbjct: 218  GEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYANA 277

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
            G ID G ++F +V  KDVVLWNCL+DGYAKS LL+ESL+LL+ MK E V+PNSSTL GLL
Sbjct: 278  GFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLL 337

Query: 948  SACATSGAFAVGQCIHNYVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVK 769
            SACA +GA +VG CI NYVE+ Q+ LDAVLGTAL+DMYCKCG L  AIDVF+RM+ KDVK
Sbjct: 338  SACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVK 397

Query: 768  SWTAMILGYGMHGDAKDAIMMFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMM 589
            SWTAMI GYG+HG AK+AIM+FH+ME EG++ NEVTFLAVL++CSHGG+V EGIS+ E M
Sbjct: 398  SWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGGMVVEGISFLEKM 457

Query: 588  IQEYGLTPKVEHYGCMIDLLDRAGLLEKHIT*LRVCPL 475
            ++EYG +PKVEHYGCMIDLL RAGLLE+    ++  P+
Sbjct: 458  VREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPI 495



 Score =  123 bits (309), Expect = 1e-25
 Identities = 94/362 (25%), Positives = 166/362 (45%), Gaps = 3/362 (0%)
 Frame = -1

Query: 1575 TFVSTLKSCAGVLAIWTGCAVHSIVILSGLDMFINVKNTLLHLYCVCGRIEDAHQLFEDF 1396
            + +S L+SC     I   C VH  ++ +GL   +NV  TL  L  +   I+D       F
Sbjct: 33   SLISLLESCTQTSEI---CQVHGSMVKTGL---VNVPFTLSKL--LASSIQDTDYAASIF 84

Query: 1395 SQ--ERDLVSWNTLMGGYLRVFRPAVVLDLFKQLSLDGVKVGATTMLSVLSATSDCGDTS 1222
            +Q    +L  +NT++ GY     P     +FK L    + +   + +  L A +      
Sbjct: 85   NQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYE 144

Query: 1221 KGECLHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEVDVK-DVVLWNCLMDGY 1045
             G+ +HG  +++G  L +NV  AL+  Y   G I    ++FDE+  K D+V WN L+ GY
Sbjct: 145  TGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGY 204

Query: 1044 AKSGLLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHNYVEQHQVVLDA 865
             +         L   M  + ++ +++T++ +L A    G    G  +H +  +     D 
Sbjct: 205  LQVPHPTMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDL 264

Query: 864  VLGTALLDMYCKCGLLRNAIDVFDRMKRKDVKSWTAMILGYGMHGDAKDAIMMFHQMEEE 685
             + TAL+DMY   G +     +F ++ +KDV  W  +I GY      ++++ +   M+ E
Sbjct: 265  NVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKRE 324

Query: 684  GFKHNEVTFLAVLSSCSHGGLVTEGISYFEMMIQEYGLTPKVEHYGCMIDLLDRAGLLEK 505
              K N  T + +LS+C+  G  + G+      ++E  +         ++D+  + G LEK
Sbjct: 325  QVKPNSSTLVGLLSACAAAGASSVGLC-ISNYVEEEQIALDAVLGTALVDMYCKCGFLEK 383

Query: 504  HI 499
             I
Sbjct: 384  AI 385



 Score =  116 bits (290), Expect = 2e-23
 Identities = 62/111 (55%), Positives = 75/111 (67%)
 Frame = -3

Query: 529 GSCRVAREAHNLIKSLPIEGDATAWRALLAACRVHGNVDLGERVKKALEETYGEYPADSI 350
           G   +  EAHNLIKSLPIEGDAT WRALLAACRV+GNVDLGE VK+ L E + E+P DSI
Sbjct: 478 GRAGLLEEAHNLIKSLPIEGDATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSI 537

Query: 349 VLSSTYAVAGRMTGHKTTYGTEEGKVLKNEENRSLGVKEAGRSTIELGEEG 197
           +LSSTYA+AGR+  +      +E K++          KEAG S IE+   G
Sbjct: 538 LLSSTYAIAGRLPDYTRMQEIKEEKMM----------KEAGCSVIEMDSHG 578



 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 4/317 (1%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            ++ GY+ SD  +E+L L   M+   +  +  T V  L +CA   A   G  + + V    
Sbjct: 301  LIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQ 360

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
            + +   +   L+ +YC CG +E A  +FE   + +D+ SW  ++ GY    +    + +F
Sbjct: 361  IALDAVLGTALVDMYCKCGFLEKAIDVFERM-EIKDVKSWTAMISGYGVHGQAKNAIMIF 419

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
             ++ ++G +    T L+VL+A           C HG  +  G     +    +V  YG +
Sbjct: 420  HRMEVEGYRPNEVTFLAVLNA-----------CSHGGMVVEGI----SFLEKMVREYGFS 464

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
              ++                + C++D   ++GLLEE+  L++S+ +E    +++    LL
Sbjct: 465  PKVEH---------------YGCMIDLLGRAGLLEEAHNLIKSLPIEG---DATGWRALL 506

Query: 948  SACATSGAFAVGQCIHNYV----EQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKR 781
            +AC   G   +G+C+   +    ++H    D++L   L   Y   G L +   + +  + 
Sbjct: 507  AACRVYGNVDLGECVKRVLLEIFDEHPT--DSIL---LSSTYAIAGRLPDYTRMQEIKEE 561

Query: 780  KDVKSWTAMILGYGMHG 730
            K +K     ++    HG
Sbjct: 562  KMMKEAGCSVIEMDSHG 578


>ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g26900, mitochondrial; Flags: Precursor
            gi|4262179|gb|AAD14496.1| Hypothetical protein
            [Arabidopsis thaliana] gi|332192635|gb|AEE30756.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 572

 Score =  430 bits (1106), Expect = e-118
 Identities = 213/400 (53%), Positives = 287/400 (71%), Gaps = 2/400 (0%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            M+RGYSISD P+ A  +FN +R   + LD+F+F++TLKSC+  L +  G  +H I + SG
Sbjct: 96   MIRGYSISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSG 155

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
              +F +++N L+H YCVCG+I DA ++F++  Q  D V+++TLM GYL+V + A+ LDLF
Sbjct: 156  FMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLF 215

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
            + +    V V  +T+LS LSA SD GD S  E  H  CIK G  LD ++ TAL+GMYGKT
Sbjct: 216  RIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKT 275

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
            G I S RR+FD    KDVV WNC++D YAK+GLLEE + LLR MK E ++PNSST  GLL
Sbjct: 276  GGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLL 335

Query: 948  SACATSGAFAVGQCIHNYVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVK 769
            S+CA S A  VG+ + + +E+ ++ LDA+LGTAL+DMY K GLL  A+++F+RMK KDVK
Sbjct: 336  SSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVK 395

Query: 768  SWTAMILGYGMHGDAKDAIMMFHQMEEEGFK--HNEVTFLAVLSSCSHGGLVTEGISYFE 595
            SWTAMI GYG HG A++A+ +F++MEEE  K   NE+TFL VL++CSHGGLV EGI  F+
Sbjct: 396  SWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEGIRCFK 455

Query: 594  MMIQEYGLTPKVEHYGCMIDLLDRAGLLEKHIT*LRVCPL 475
             M++ Y  TPKVEHYGC++DLL RAG LE+    +R  P+
Sbjct: 456  RMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPI 495



 Score =  141 bits (355), Expect = 6e-31
 Identities = 110/372 (29%), Positives = 179/372 (48%), Gaps = 3/372 (0%)
 Frame = -1

Query: 1605 RNLNIMLDQFT--FVSTLKSCAGVLAIWTGCAVHSIVILSGLDMFINVKNTLLHLYCVCG 1432
            RNL  +L       ++ L+SC   + +     +H  ++ +GLD      + LL    V  
Sbjct: 18   RNLESLLSPQCQKLINDLRSCRDTVEV---SRIHGYMVKTGLDKDDFAVSKLLAFSSVLD 74

Query: 1431 RIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLFKQLSLDGVKVGATTMLSVL 1252
             I  A  +FE  S   +L  +NT++ GY     P     +F QL   G+ +   + ++ L
Sbjct: 75   -IRYASSIFEHVSNT-NLFMFNTMIRGYSISDEPERAFSVFNQLRAKGLTLDRFSFITTL 132

Query: 1251 SATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEVDVK-DV 1075
             + S     S GE LHG  +++GF + +++  AL+  Y   G I   R+VFDE+    D 
Sbjct: 133  KSCSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDA 192

Query: 1074 VLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHNY 895
            V ++ LM+GY +      +L L R M+   V  N STL   LSA +  G  +  +  H  
Sbjct: 193  VTFSTLMNGYLQVSKKALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVL 252

Query: 894  VEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVKSWTAMILGYGMHGDAKDA 715
              +  + LD  L TAL+ MY K G + +A  +FD   RKDV +W  MI  Y   G  ++ 
Sbjct: 253  CIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEEC 312

Query: 714  IMMFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMMIQEYGLTPKVEHYGCMID 535
            + +  QM+ E  K N  TF+ +LSSC++      G +  + +++E  +         ++D
Sbjct: 313  VWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVAD-LLEEERIALDAILGTALVD 371

Query: 534  LLDRAGLLEKHI 499
            +  + GLLEK +
Sbjct: 372  MYAKVGLLEKAV 383



 Score = 88.2 bits (217), Expect = 6e-15
 Identities = 52/100 (52%), Positives = 64/100 (64%)
 Frame = -3

Query: 508 EAHNLIKSLPIEGDATAWRALLAACRVHGNVDLGERVKKALEETYGEYPADSIVLSSTYA 329
           EA+ LI++LPI  D+TAWRALLAACRV+GN DLGE V   L E    +PAD+I+L+ T+A
Sbjct: 485 EAYELIRNLPITSDSTAWRALLAACRVYGNADLGESVMMRLAEMGETHPADAILLAGTHA 544

Query: 328 VAGRMTGHKTTYGTEEGKVLKNEENRSLGVKEAGRSTIEL 209
           VAG              K L NE N+  G KEAG S IE+
Sbjct: 545 VAG-----------NPEKSLDNELNK--GRKEAGYSAIEI 571


>ref|XP_002522400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538285|gb|EEF39892.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 476

 Score =  425 bits (1092), Expect = e-116
 Identities = 210/362 (58%), Positives = 271/362 (74%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            +LRG+SI D PK+A  +F  +R   I LDQF+F++ LK+ A  LA+  G  +H IV  SG
Sbjct: 98   LLRGFSIGDNPKQAFAVFKNLRAQRIELDQFSFITILKASARELAVKAGQGIHGIVARSG 157

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
              MF+NVKNTLLHLY VCG I DA +LF++FSQ  DLVSWN LMG YL V +PA+ ++++
Sbjct: 158  YLMFVNVKNTLLHLYSVCGLIGDAQKLFDEFSQLNDLVSWNALMGAYLHVSQPAMTIEVY 217

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
             Q+   G  +   T LSVLSA +D GD + GE +H  CIK GFC + NV TAL+ MY KT
Sbjct: 218  GQMFRYGFIMSVATSLSVLSAFADLGDPTGGETIHACCIKIGFCSNLNVVTALIEMYAKT 277

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
            G IDSGRR+FD +  KDV+LWNC++D YAK GLLE+++ALL+ MKLE VR NSS+LAGLL
Sbjct: 278  GRIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQAIALLQLMKLEGVRANSSSLAGLL 337

Query: 948  SACATSGAFAVGQCIHNYVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVK 769
            +ACA SG+  +G  + +YVE  ++ +DAVLGTAL+DM+ KCG L  AI VF+RM+ KDVK
Sbjct: 338  AACAASGSIKLGWRLSDYVEAEELEVDAVLGTALVDMFGKCGFLDKAIQVFERMESKDVK 397

Query: 768  SWTAMILGYGMHGDAKDAIMMFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMM 589
            SWTAMILGYG+HG A++A+ +F++ME+EGF  NEVTFL VLS+CSHGGLV E +  FE M
Sbjct: 398  SWTAMILGYGVHGQARNAVALFYRMEKEGFIPNEVTFLGVLSACSHGGLVVEAMKCFERM 457

Query: 588  IQ 583
            +Q
Sbjct: 458  VQ 459



 Score =  107 bits (266), Expect = 1e-20
 Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 4/370 (1%)
 Frame = -1

Query: 1596 NIMLDQF-TFVSTLKSCAGVLAIWTGCAVHSIVILSGLDMFINVKNTLLHLYCVCGRIED 1420
            N ++ +F + +  LK C     I     VH  +I +G+D      + LL        I+D
Sbjct: 25   NFVVPRFHSLICLLKLCKRTSEI---SQVHGFMIKTGIDQDPFATSKLL-----ASSIQD 76

Query: 1419 AHQLFEDFS--QERDLVSWNTLMGGYLRVFRPAVVLDLFKQLSLDGVKVGATTMLSVLSA 1246
                   F+  Q  +L  +NTL+ G+     P     +FK L    +++   + +++L A
Sbjct: 77   LKYAASIFNHTQNPNLFMYNTLLRGFSIGDNPKQAFAVFKNLRAQRIELDQFSFITILKA 136

Query: 1245 TSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEV-DVKDVVL 1069
            ++       G+ +HG   ++G+ +  NV   L+ +Y   G I   +++FDE   + D+V 
Sbjct: 137  SARELAVKAGQGIHGIVARSGYLMFVNVKNTLLHLYSVCGLIGDAQKLFDEFSQLNDLVS 196

Query: 1068 WNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHNYVE 889
            WN LM  Y        ++ +   M       + +T   +LSA A  G    G+ IH    
Sbjct: 197  WNALMGAYLHVSQPAMTIEVYGQMFRYGFIMSVATSLSVLSAFADLGDPTGGETIHACCI 256

Query: 888  QHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVKSWTAMILGYGMHGDAKDAIM 709
            +     +  + TAL++MY K G + +   +FD +  KDV  W  MI  Y   G  + AI 
Sbjct: 257  KIGFCSNLNVVTALIEMYAKTGRIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQAIA 316

Query: 708  MFHQMEEEGFKHNEVTFLAVLSSCSHGGLVTEGISYFEMMIQEYGLTPKVEHYGCMIDLL 529
            +   M+ EG + N  +   +L++C+  G +  G    +  ++   L         ++D+ 
Sbjct: 317  LLQLMKLEGVRANSSSLAGLLAACAASGSIKLGWRLSD-YVEAEELEVDAVLGTALVDMF 375

Query: 528  DRAGLLEKHI 499
             + G L+K I
Sbjct: 376  GKCGFLDKAI 385



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 31/293 (10%)
 Frame = -1

Query: 1236 CGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEVDVKDVVLWNCL 1057
            C  TS+   +HG+ IK G   D    + L+       ++     +F+     ++ ++N L
Sbjct: 41   CKRTSEISQVHGFMIKTGIDQDPFATSKLLA--SSIQDLKYAASIFNHTQNPNLFMYNTL 98

Query: 1056 MDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHNYVEQHQV 877
            + G++     +++ A+ ++++ + +  +  +   +L A A   A   GQ IH  V +   
Sbjct: 99   LRGFSIGDNPKQAFAVFKNLRAQRIELDQFSFITILKASARELAVKAGQGIHGIVARSGY 158

Query: 876  VLDAVLGTALLDMYCKCGLLRNAIDVFDRMKR-KDVKSWTAMILGYGMHGDAKDAIMMFH 700
            ++   +   LL +Y  CGL+ +A  +FD   +  D+ SW A++  Y         I ++ 
Sbjct: 159  LMFVNVKNTLLHLYSVCGLIGDAQKLFDEFSQLNDLVSWNALMGAYLHVSQPAMTIEVYG 218

Query: 699  QMEEEGFKHNEVTFLAVLSSCSHGGLVTEG---------------ISYFEMMIQEYGLTP 565
            QM   GF  +  T L+VLS+ +  G  T G               ++    +I+ Y  T 
Sbjct: 219  QMFRYGFIMSVATSLSVLSAFADLGDPTGGETIHACCIKIGFCSNLNVVTALIEMYAKTG 278

Query: 564  KVEH---------------YGCMIDLLDRAGLLEKHIT*LRVCPLRVMQLHGV 451
            +++                + CMID   + GLLE+      +  L++M+L GV
Sbjct: 279  RIDSGRRIFDGIVEKDVILWNCMIDKYAKVGLLEQ-----AIALLQLMKLEGV 326


>ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297336467|gb|EFH66884.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 568

 Score =  424 bits (1091), Expect = e-116
 Identities = 213/400 (53%), Positives = 284/400 (71%), Gaps = 2/400 (0%)
 Frame = -1

Query: 1668 MLRGYSISDYPKEALVLFNYMRNLNIMLDQFTFVSTLKSCAGVLAIWTGCAVHSIVILSG 1489
            M+RGYSISD P+ A  +FN +R   I LD+F+F++TLKSC+  L    G  +H I + SG
Sbjct: 92   MIRGYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCSRDLCSSIGEGLHGIALRSG 151

Query: 1488 LDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQERDLVSWNTLMGGYLRVFRPAVVLDLF 1309
              +F +++N LL  YCVCGRI DA ++F++     D VS++TLM GYL+V + A+ LDLF
Sbjct: 152  FMVFTDLRNALLQFYCVCGRINDARKVFDEMPHSVDSVSFSTLMNGYLQVSKKALALDLF 211

Query: 1308 KQLSLDGVKVGATTMLSVLSATSDCGDTSKGECLHGYCIKNGFCLDSNVATALVGMYGKT 1129
            + +    V V  +T+LS LSAT D G+ S  E  HG CIK GF LD ++ TAL+GMYGK 
Sbjct: 212  RIMRNSEVPVNVSTLLSFLSATGDLGNLSGAESAHGLCIKIGFNLDLHLITALIGMYGKI 271

Query: 1128 GNIDSGRRVFDEVDVKDVVLWNCLMDGYAKSGLLEESLALLRSMKLESVRPNSSTLAGLL 949
            G+I S RR+FD    KDVV WNC++D YAK G+LEE + LLR MK E ++PNSST  GLL
Sbjct: 272  GDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLLRQMKYERMKPNSSTFVGLL 331

Query: 948  SACATSGAFAVGQCIHNYVEQHQVVLDAVLGTALLDMYCKCGLLRNAIDVFDRMKRKDVK 769
            S+CA S A  VG+ + + VE+ ++ LDA LGTAL+DMY K G+L  A+++F+RMK KDVK
Sbjct: 332  SSCANSEAAFVGRSVADLVEEERIALDAKLGTALVDMYAKLGMLDKAVEIFNRMKDKDVK 391

Query: 768  SWTAMILGYGMHGDAKDAIMMFHQMEEEGFK--HNEVTFLAVLSSCSHGGLVTEGISYFE 595
            SWTAMI GYG HG A++A+ +F++MEEE  K   NE+TFL VL++CSHGGL+ EGI  F+
Sbjct: 392  SWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLIMEGIRCFK 451

Query: 594  MMIQEYGLTPKVEHYGCMIDLLDRAGLLEKHIT*LRVCPL 475
             M++ Y  TPKVEHYGC++DLL RAG LE+    +R  P+
Sbjct: 452  RMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPI 491



 Score =  139 bits (350), Expect = 2e-30
 Identities = 105/358 (29%), Positives = 174/358 (48%), Gaps = 1/358 (0%)
 Frame = -1

Query: 1569 VSTLKSCAGVLAIWTGCAVHSIVILSGLDMFINVKNTLLHLYCVCGRIEDAHQLFEDFSQ 1390
            V  L+SC  +  +     +H  ++ +G+D      + LL    V   I  A  +FE  S 
Sbjct: 28   VEDLRSCRDIFEV---SRIHGYMVKTGIDKDDFSVSKLLAFSSVLD-IRYASSIFEHVSN 83

Query: 1389 ERDLVSWNTLMGGYLRVFRPAVVLDLFKQLSLDGVKVGATTMLSVLSATSDCGDTSKGEC 1210
              +L  +NT++ GY     P     +F QL   G+ +   + ++ L + S    +S GE 
Sbjct: 84   T-NLYMFNTMIRGYSISDEPERAFRVFNQLRAKGITLDRFSFITTLKSCSRDLCSSIGEG 142

Query: 1209 LHGYCIKNGFCLDSNVATALVGMYGKTGNIDSGRRVFDEVDVK-DVVLWNCLMDGYAKSG 1033
            LHG  +++GF + +++  AL+  Y   G I+  R+VFDE+    D V ++ LM+GY +  
Sbjct: 143  LHGIALRSGFMVFTDLRNALLQFYCVCGRINDARKVFDEMPHSVDSVSFSTLMNGYLQVS 202

Query: 1032 LLEESLALLRSMKLESVRPNSSTLAGLLSACATSGAFAVGQCIHNYVEQHQVVLDAVLGT 853
                +L L R M+   V  N STL   LSA    G  +  +  H    +    LD  L T
Sbjct: 203  KKALALDLFRIMRNSEVPVNVSTLLSFLSATGDLGNLSGAESAHGLCIKIGFNLDLHLIT 262

Query: 852  ALLDMYCKCGLLRNAIDVFDRMKRKDVKSWTAMILGYGMHGDAKDAIMMFHQMEEEGFKH 673
            AL+ MY K G + +A  +FD   RKDV +W  MI  Y   G  ++ + +  QM+ E  K 
Sbjct: 263  ALIGMYGKIGDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGILEECVWLLRQMKYERMKP 322

Query: 672  NEVTFLAVLSSCSHGGLVTEGISYFEMMIQEYGLTPKVEHYGCMIDLLDRAGLLEKHI 499
            N  TF+ +LSSC++      G S  + +++E  +    +    ++D+  + G+L+K +
Sbjct: 323  NSSTFVGLLSSCANSEAAFVGRSVAD-LVEEERIALDAKLGTALVDMYAKLGMLDKAV 379



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 49/100 (49%), Positives = 64/100 (64%)
 Frame = -3

Query: 508 EAHNLIKSLPIEGDATAWRALLAACRVHGNVDLGERVKKALEETYGEYPADSIVLSSTYA 329
           EA+ LI++LPI  D+TAWRALLAACRV+GN DLGE V   L E    +PAD+I+++ T+A
Sbjct: 481 EAYELIRNLPITSDSTAWRALLAACRVYGNADLGESVMMRLAEMDEIHPADAILIAGTHA 540

Query: 328 VAGRMTGHKTTYGTEEGKVLKNEENRSLGVKEAGRSTIEL 209
           VAG              K L +E N++   KEAG S IE+
Sbjct: 541 VAG-----------NPQKSLDDELNKAR--KEAGYSAIEI 567