BLASTX nr result

ID: Panax21_contig00011306 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00011306
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298161.1| predicted protein [Populus trichocarpa] gi|2...    84   9e-15
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...    78   9e-13
ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-li...    77   1e-12
ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...    77   1e-12
emb|CBI24290.3| unnamed protein product [Vitis vinifera]               77   1e-12

>ref|XP_002298161.1| predicted protein [Populus trichocarpa] gi|222845419|gb|EEE82966.1|
           predicted protein [Populus trichocarpa]
          Length = 429

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = -3

Query: 452 TII*LENYINYKPSSSG*DDNRMKRMSLIARAAESMADGDIINVHIRRYRKW 297
           ++I  ENYINY+PSS G DDN MKRMSLIARAAES+ADGDIINV IRRYR+W
Sbjct: 97  SVIWQENYINYRPSSIGKDDNGMKRMSLIARAAESIADGDIINVQIRRYRQW 148


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = -3

Query: 437 ENYINYKPSSSG*DDNRMKRMSLIARAAESMADGDIINVHIRRYRKW 297
           ENYINY+PS +G DD+ +KRM+LIARAAES+ADGDI+NV IRRYR+W
Sbjct: 795 ENYINYRPSMAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQW 841


>ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
          Length = 933

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 35/47 (74%), Positives = 42/47 (89%)
 Frame = -3

Query: 437 ENYINYKPSSSG*DDNRMKRMSLIARAAESMADGDIINVHIRRYRKW 297
           ENYINY+P+ +G DDN +KRMSL+ARAAES+ DGDIINV IRRYR+W
Sbjct: 613 ENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQIRRYRQW 659


>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = -3

Query: 437 ENYINYKPSSSG*DDNRMKRMSLIARAAESMADGDIINVHIRRYRKW 297
           ENYINY+PS +G DD+ +KRM+LIARAAES+ADGDI+NV IRRYR+W
Sbjct: 627 ENYINYRPSLAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQW 673


>emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 35/47 (74%), Positives = 42/47 (89%)
 Frame = -3

Query: 437 ENYINYKPSSSG*DDNRMKRMSLIARAAESMADGDIINVHIRRYRKW 297
           ENYINY+P+ +G DDN +KRMSL+ARAAES+ DGDIINV IRRYR+W
Sbjct: 621 ENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQIRRYRQW 667


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