BLASTX nr result

ID: Panax21_contig00010918 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00010918
         (599 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADL36650.1| C3HL domain class transcription factor [Malus x d...   327   1e-87
ref|XP_003544707.1| PREDICTED: zinc finger CCCH domain-containin...   326   2e-87
ref|XP_003616654.1| Zinc finger CCCH domain-containing protein [...   326   2e-87
ref|XP_003519610.1| PREDICTED: zinc finger CCCH domain-containin...   324   8e-87
ref|XP_004163130.1| PREDICTED: zinc finger CCCH domain-containin...   317   1e-84

>gb|ADL36650.1| C3HL domain class transcription factor [Malus x domestica]
          Length = 665

 Score =  327 bits (837), Expect = 1e-87
 Identities = 155/207 (74%), Positives = 167/207 (80%), Gaps = 8/207 (3%)
 Frame = +1

Query: 1   RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYTYSCVPCPEFRKGSCLKGDGCE 180
           RM++FKVKPCSRAYSHDWTECPFVHPGENARRRDPKKY YSCVPCPEFRKGSC KGD CE
Sbjct: 221 RMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDVCE 280

Query: 181 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKVEELRPLYASTGSAMPSPKSGSVS 360
           YAHGVFESWLHPAQYRTRLCKDETGC RKVCFFAH+ EELRP+YASTGSAMPSP+S SVS
Sbjct: 281 YAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPEELRPVYASTGSAMPSPRSMSVS 340

Query: 361 SMDMGALSPMGIGG--------STPPMSPSVTCSSPMGGNLWQNKVNLTPPALQFPGSRL 516
           + DM ALSP+ +G         STPPMSP    SSP  G LWQNKVNLTPPALQ PGSRL
Sbjct: 341 AADMAALSPLALGSSAMSMPATSTPPMSPLSAASSPKSGGLWQNKVNLTPPALQLPGSRL 400

Query: 517 KAAFNARDXXXXXXXXXXXSIRTQQQR 597
           K+A +ARD           S  +QQQ+
Sbjct: 401 KSACSARDLELEMELLGLDSHSSQQQQ 427


>ref|XP_003544707.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like
           isoform 1 [Glycine max] gi|356552715|ref|XP_003544708.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           29-like isoform 2 [Glycine max]
          Length = 680

 Score =  326 bits (836), Expect = 2e-87
 Identities = 152/207 (73%), Positives = 166/207 (80%), Gaps = 8/207 (3%)
 Frame = +1

Query: 1   RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYTYSCVPCPEFRKGSCLKGDGCE 180
           RMY+FKVKPCSRAYSHDWTECPFVHPGENARRRDP+KY YSCVPCPEFRKG+C KGD CE
Sbjct: 231 RMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCE 290

Query: 181 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKVEELRPLYASTGSAMPSPKSGSVS 360
           YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHK EELRP+YASTGSAMPSPKS S S
Sbjct: 291 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSPKSYSAS 350

Query: 361 SMDMGALSPMGIGG--------STPPMSPSVTCSSPMGGNLWQNKVNLTPPALQFPGSRL 516
            +DM A+SP+ +          STPPMSP    SSP  G++WQNK+NLTPP+LQ PGSRL
Sbjct: 351 GLDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSMWQNKINLTPPSLQLPGSRL 410

Query: 517 KAAFNARDXXXXXXXXXXXSIRTQQQR 597
           KAA +ARD           S   QQQ+
Sbjct: 411 KAALSARDLEMEMELLGLESPARQQQQ 437


>ref|XP_003616654.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355517989|gb|AES99612.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 668

 Score =  326 bits (836), Expect = 2e-87
 Identities = 153/207 (73%), Positives = 166/207 (80%), Gaps = 8/207 (3%)
 Frame = +1

Query: 1   RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYTYSCVPCPEFRKGSCLKGDGCE 180
           RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDP+KY YSCVPCPEFRKGSC KGD CE
Sbjct: 204 RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCE 263

Query: 181 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKVEELRPLYASTGSAMPSPKSGSVS 360
           YAHGVFESWLHPAQYRTRLCKDETGC RKVCFFAH+ EELRP+YASTGSAMPSPKS S S
Sbjct: 264 YAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSAS 323

Query: 361 SMDMGALSPMGIGG--------STPPMSPSVTCSSPMGGNLWQNKVNLTPPALQFPGSRL 516
            MDM ++SP+ +          STPPMSP    SSP  GN+WQNK+NLTPP+LQ PGSRL
Sbjct: 324 GMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRL 383

Query: 517 KAAFNARDXXXXXXXXXXXSIRTQQQR 597
           K+A +ARD           S R QQQ+
Sbjct: 384 KSALSARDLDLEMELLGLDSPRRQQQQ 410


>ref|XP_003519610.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like
           [Glycine max]
          Length = 657

 Score =  324 bits (830), Expect = 8e-87
 Identities = 150/188 (79%), Positives = 163/188 (86%), Gaps = 8/188 (4%)
 Frame = +1

Query: 1   RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYTYSCVPCPEFRKGSCLKGDGCE 180
           RMY+FKVKPCSRAYSHDWTECPFVHPGENARRRDP+KY YSCVPCPEFRKG+C KGD CE
Sbjct: 219 RMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCE 278

Query: 181 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKVEELRPLYASTGSAMPSPKSGSVS 360
           YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHK EELRP+YASTGSAMPSPKS S S
Sbjct: 279 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSPKSYSAS 338

Query: 361 SMDMGALSPMGIGG--------STPPMSPSVTCSSPMGGNLWQNKVNLTPPALQFPGSRL 516
            +DM A+SP+ +          STPPMSP +T SSP  G+LWQNK+NLTPP+LQ PGSRL
Sbjct: 339 GLDMTAMSPLALSSTSLPMPTVSTPPMSP-LTASSPKSGSLWQNKINLTPPSLQLPGSRL 397

Query: 517 KAAFNARD 540
           KAA +ARD
Sbjct: 398 KAALSARD 405


>ref|XP_004163130.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like
           [Cucumis sativus]
          Length = 683

 Score =  317 bits (811), Expect = 1e-84
 Identities = 144/188 (76%), Positives = 158/188 (84%), Gaps = 8/188 (4%)
 Frame = +1

Query: 1   RMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYTYSCVPCPEFRKGSCLKGDGCE 180
           RMY+FKVKPCSRAYSHDWTECPFVHPGENARRRDP+KY YSCVPCPEFRKG+C K D CE
Sbjct: 232 RMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCE 291

Query: 181 YAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKVEELRPLYASTGSAMPSPKSGSVS 360
           YAHGVFESWLHPAQYRTRLCKDETGC RKVCFFAHK +ELRP+YASTGS MPSP+S S +
Sbjct: 292 YAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSN 351

Query: 361 SMDMGALSPMGIGG--------STPPMSPSVTCSSPMGGNLWQNKVNLTPPALQFPGSRL 516
           + DM  +SP+ +G         STPPMSP  + SSP  GNLWQNK+NLTPPALQ PGSRL
Sbjct: 352 TGDMSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRL 411

Query: 517 KAAFNARD 540
           KA  +ARD
Sbjct: 412 KATLSARD 419


Top