BLASTX nr result

ID: Panax21_contig00010807 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00010807
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536809.1| PREDICTED: zinc finger CCCH domain-containin...   208   3e-52
gb|ACU19635.1| unknown [Glycine max]                                  208   3e-52
ref|NP_001240135.1| uncharacterized protein LOC100818781 [Glycin...   207   5e-52
ref|XP_002285629.1| PREDICTED: zinc finger CCCH domain-containin...   204   5e-51
ref|XP_003592859.1| Zinc finger CCCH domain-containing protein [...   192   2e-47

>ref|XP_003536809.1| PREDICTED: zinc finger CCCH domain-containing protein 14-like
           [Glycine max]
          Length = 297

 Score =  208 bits (530), Expect = 3e-52
 Identities = 94/126 (74%), Positives = 104/126 (82%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   PCTKFFSTSGCPFGEGCHFLHYVPGGIKAIAQM--TGNNPAHAAPPRNSVLPPSFPDGSS 176
           PCTKFFSTSGCPFGEGCHFLHYVPGG KA++Q+   G+NP      RN V PPSFPDGSS
Sbjct: 38  PCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVIPQVGRNPV-PPSFPDGSS 96

Query: 177 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTAPSHEDPRAMGPRQGSRFGGHME 356
           PP VK+RLCNK+N+AEGCKFGDKCHFAHGEWELGRPTAPS+EDPR MG    SR GG +E
Sbjct: 97  PPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVE 156

Query: 357 PTPPSH 374
           P  P+H
Sbjct: 157 PPHPAH 162


>gb|ACU19635.1| unknown [Glycine max]
          Length = 202

 Score =  208 bits (530), Expect = 3e-52
 Identities = 94/126 (74%), Positives = 104/126 (82%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   PCTKFFSTSGCPFGEGCHFLHYVPGGIKAIAQM--TGNNPAHAAPPRNSVLPPSFPDGSS 176
           PCTKFFSTSGCPFGEGCHFLHYVPGG KA++Q+   G+NP      RN V PPSFPDGSS
Sbjct: 38  PCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVIPQVGRNPV-PPSFPDGSS 96

Query: 177 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTAPSHEDPRAMGPRQGSRFGGHME 356
           PP VK+RLCNK+N+AEGCKFGDKCHFAHGEWELGRPTAPS+EDPR MG    SR GG +E
Sbjct: 97  PPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVE 156

Query: 357 PTPPSH 374
           P  P+H
Sbjct: 157 PPHPAH 162


>ref|NP_001240135.1| uncharacterized protein LOC100818781 [Glycine max]
           gi|255636715|gb|ACU18693.1| unknown [Glycine max]
          Length = 297

 Score =  207 bits (528), Expect = 5e-52
 Identities = 93/126 (73%), Positives = 104/126 (82%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   PCTKFFSTSGCPFGEGCHFLHYVPGGIKAIAQM--TGNNPAHAAPPRNSVLPPSFPDGSS 176
           PCTKFFSTSGCPFGEGCHFLHYVPGG KA++Q+   G+NP      RN V PPSFPDGSS
Sbjct: 38  PCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVTPQVGRNPV-PPSFPDGSS 96

Query: 177 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTAPSHEDPRAMGPRQGSRFGGHME 356
           PP VK+RLCNK+N+AEGCKFGDKCHFAHGEWELGRPTAPS+EDPR +G    SR GG +E
Sbjct: 97  PPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVE 156

Query: 357 PTPPSH 374
           P  P+H
Sbjct: 157 PPHPAH 162


>ref|XP_002285629.1| PREDICTED: zinc finger CCCH domain-containing protein 14-like
           [Vitis vinifera]
          Length = 301

 Score =  204 bits (520), Expect = 5e-51
 Identities = 95/125 (76%), Positives = 101/125 (80%), Gaps = 3/125 (2%)
 Frame = +3

Query: 3   PCTKFFSTSGCPFGEGCHFLHYVPGGIKAIAQMT--GNNPAHAAPPRNSVLPPSFPDGSS 176
           PCTKFFSTSGCPFGEGCHFLHYVPGGIKA++QM   G N   A P RN  +PPSFPDGSS
Sbjct: 42  PCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMVNLGGNTPLAPPARNPAVPPSFPDGSS 101

Query: 177 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTAPS-HEDPRAMGPRQGSRFGGHM 353
           PPAVK+RLCNKYNSAEGCKFGDKCHFAHGEWELG+PT PS HED R MG     R  G +
Sbjct: 102 PPAVKTRLCNKYNSAEGCKFGDKCHFAHGEWELGKPTLPSHHEDHRGMG---SGRLAGRL 158

Query: 354 EPTPP 368
           EP PP
Sbjct: 159 EPPPP 163


>ref|XP_003592859.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355481907|gb|AES63110.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 340

 Score =  192 bits (489), Expect = 2e-47
 Identities = 86/126 (68%), Positives = 97/126 (76%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   PCTKFFSTSGCPFGEGCHFLHYVPGGIKAIAQMTGNNPAHAAPP--RNSVLPPSFPDGSS 176
           P  + F TSGCPFGEGCHFLHYVPGG KA+ QM     + A PP  RN  +P SFPDGSS
Sbjct: 80  PLWRDFDTSGCPFGEGCHFLHYVPGGFKAVYQMINVGSSPAIPPIGRNPNVPQSFPDGSS 139

Query: 177 PPAVKSRLCNKYNSAEGCKFGDKCHFAHGEWELGRPTAPSHEDPRAMGPRQGSRFGGHME 356
           PP  K+RLCNK+N+AEGCKFGDKCHFAHGEWELGRPT P++ED RAMG  Q S  GG +E
Sbjct: 140 PPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIE 199

Query: 357 PTPPSH 374
           P PP+H
Sbjct: 200 PPPPAH 205


Top