BLASTX nr result

ID: Panax21_contig00009981 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00009981
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004158182.1| PREDICTED: LOW QUALITY PROTEIN: structural m...    70   5e-20
ref|XP_004135946.1| PREDICTED: structural maintenance of chromos...    70   5e-20
ref|XP_002871691.1| structural maintenance of chromosomes family...    75   7e-20
ref|XP_002272410.1| PREDICTED: structural maintenance of chromos...    70   4e-19
ref|NP_197096.1| structural maintenance of chromosomes 5 [Arabid...    71   9e-19

>ref|XP_004158182.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 5-like [Cucumis sativus]
          Length = 1053

 Score = 70.1 bits (170), Expect(2) = 5e-20
 Identities = 32/62 (51%), Positives = 46/62 (74%)
 Frame = -2

Query: 187 DVDVGELENLRSKKNKLEEEISVLDSSLKLLQSEKRHFEDEAAQLHRQREDILNIAQHEK 8
           ++D GE++ LRS+K++LEE +S L+ + K  Q+E R  EDE A+L + REDILN  QHEK
Sbjct: 616 NLDAGEIDGLRSRKSELEESVSALEENCKSCQNELRLIEDEEAKLRKHREDILNTVQHEK 675

Query: 7   KK 2
           +K
Sbjct: 676 RK 677



 Score = 52.4 bits (124), Expect(2) = 5e-20
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -3

Query: 351 NHYRWSKSRYGVHVSIIVESVNHSRLLLCNL 259
           NHYRWS+SRYG H+S  VE V+ SRLLLCNL
Sbjct: 587 NHYRWSRSRYGGHISGSVEPVDRSRLLLCNL 617


>ref|XP_004135946.1| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Cucumis sativus]
          Length = 1053

 Score = 70.1 bits (170), Expect(2) = 5e-20
 Identities = 32/62 (51%), Positives = 46/62 (74%)
 Frame = -2

Query: 187 DVDVGELENLRSKKNKLEEEISVLDSSLKLLQSEKRHFEDEAAQLHRQREDILNIAQHEK 8
           ++D GE++ LRS+K++LEE +S L+ + K  Q+E R  EDE A+L + REDILN  QHEK
Sbjct: 616 NLDAGEIDGLRSRKSELEESVSALEENCKSCQNELRLIEDEEAKLRKHREDILNTVQHEK 675

Query: 7   KK 2
           +K
Sbjct: 676 RK 677



 Score = 52.4 bits (124), Expect(2) = 5e-20
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -3

Query: 351 NHYRWSKSRYGVHVSIIVESVNHSRLLLCNL 259
           NHYRWS+SRYG H+S  VE V+ SRLLLCNL
Sbjct: 587 NHYRWSRSRYGGHISGSVEPVDRSRLLLCNL 617


>ref|XP_002871691.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297317528|gb|EFH47950.1|
           structural maintenance of chromosomes family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1052

 Score = 75.1 bits (183), Expect(2) = 7e-20
 Identities = 35/61 (57%), Positives = 51/61 (83%)
 Frame = -2

Query: 184 VDVGELENLRSKKNKLEEEISVLDSSLKLLQSEKRHFEDEAAQLHRQREDILNIAQHEKK 5
           VDVGELENLRS+K +LE+ IS ++ + K LQ+E+R  E+EAA+LH++RE+I+N++  EKK
Sbjct: 615 VDVGELENLRSRKEELEDSISFMEETHKSLQTEQRLLEEEAAKLHKEREEIVNVSHLEKK 674

Query: 4   K 2
           K
Sbjct: 675 K 675



 Score = 47.0 bits (110), Expect(2) = 7e-20
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -3

Query: 351 NHYRWSKSRYGVHVSIIVESVNHSRLLLCNL 259
           NHYRWS SRYG H S  V+SV  SRLLLC +
Sbjct: 585 NHYRWSSSRYGGHSSASVDSVYQSRLLLCGV 615


>ref|XP_002272410.1| PREDICTED: structural maintenance of chromosomes protein 5 [Vitis
           vinifera] gi|297736324|emb|CBI24962.3| unnamed protein
           product [Vitis vinifera]
          Length = 1051

 Score = 70.5 bits (171), Expect(2) = 4e-19
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = -2

Query: 181 DVGELENLRSKKNKLEEEISVLDSSLKLLQSEKRHFEDEAAQLHRQREDILNIAQHEKKK 2
           D GE+E LRSKK +LEE I  L+ + K LQ E+R  EDEAA+LH+QRE+I+N  Q EK+K
Sbjct: 616 DTGEIERLRSKKKELEEIIDDLEENFKSLQIEQRLLEDEAAKLHKQREEIINTVQLEKRK 675



 Score = 48.9 bits (115), Expect(2) = 4e-19
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = -3

Query: 351 NHYRWSKSRYGVHVSIIVESVNHSRLLLCN 262
           NHYRWS SRYG HVS IVE V  SRLL+C+
Sbjct: 585 NHYRWSVSRYGGHVSAIVEPVARSRLLVCS 614


>ref|NP_197096.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana]
           gi|9755638|emb|CAC01791.1| putative protein [Arabidopsis
           thaliana] gi|332004841|gb|AED92224.1| structural
           maintenance of chromosomes 5 [Arabidopsis thaliana]
          Length = 1053

 Score = 71.2 bits (173), Expect(2) = 9e-19
 Identities = 33/61 (54%), Positives = 49/61 (80%)
 Frame = -2

Query: 184 VDVGELENLRSKKNKLEEEISVLDSSLKLLQSEKRHFEDEAAQLHRQREDILNIAQHEKK 5
           VDVGELE LRS+K +LE+ I  ++ + K LQ+E+R  E+EAA+LH++RE+I+N++  EKK
Sbjct: 615 VDVGELEKLRSRKEELEDSILFMEETHKSLQTEQRRLEEEAAKLHKEREEIVNVSYLEKK 674

Query: 4   K 2
           K
Sbjct: 675 K 675



 Score = 47.0 bits (110), Expect(2) = 9e-19
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -3

Query: 351 NHYRWSKSRYGVHVSIIVESVNHSRLLLCNL 259
           NHYRWS SRYG H S  V+SV  SRLLLC +
Sbjct: 585 NHYRWSSSRYGGHSSASVDSVYQSRLLLCGV 615


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