BLASTX nr result
ID: Panax21_contig00009919
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00009919
(800 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF65309.1|AF229252_1 reverse transcriptase [Picea glauca] 189 5e-51
gb|AFB73911.1| polyprotein [Citrus sinensis] 171 8e-49
gb|AFB73912.1| polyprotein [Citrus sinensis] 167 4e-48
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 164 5e-47
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 164 5e-47
>gb|AAF65309.1|AF229252_1 reverse transcriptase [Picea glauca]
Length = 542
Score = 189 bits (480), Expect(2) = 5e-51
Identities = 103/204 (50%), Positives = 132/204 (64%), Gaps = 23/204 (11%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDMLL+ NN I+ VKS L+ +FDMKDLG +KY+
Sbjct: 266 LYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDRANRKLWLNQRKYV 325
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
E +L++FN+ G K V+ + LSADQCPK +EEEE+M ++PYASAV SLMY MVCTR
Sbjct: 326 ETILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTR 385
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGK-GD*RNFEMVGFVDA 473
PDI AVG LSRYMS GKEHWT +KRV++YL + L +G+ G R ++ GFVDA
Sbjct: 386 PDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDA 445
Query: 474 D*SGDVDSMKSTNGYVFNLSDGHV 545
D GD+D ++ST+GYVFNL G +
Sbjct: 446 DWVGDLDHIRSTSGYVFNLFGGAI 469
Score = 38.5 bits (88), Expect(2) = 5e-51
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECD 669
TEAEYM HAS+ +I ++RLC G + V+L+C+
Sbjct: 484 TEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCE 520
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 171 bits (434), Expect(3) = 8e-49
Identities = 91/203 (44%), Positives = 123/203 (60%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK IQ +K+ LA +F+MKDLG K Y+
Sbjct: 988 LYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYL 1047
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+++L++FNM CK + T + KLS+ CP ++ E +EM +PYASAV SLM+ M+CTR
Sbjct: 1048 KKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTR 1107
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SRYM+N G EHW A+KR+ +Y+ D AL G F + G+VD+D
Sbjct: 1108 PDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGS----EFTVRGYVDSD 1163
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD+D KST GYVF L+ V
Sbjct: 1164 FAGDLDKRKSTTGYVFTLAGAAV 1186
Score = 37.7 bits (86), Expect(3) = 8e-49
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A K+AI I+RL + G K + + + CDS S H
Sbjct: 1201 TEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQSALH 1243
Score = 32.0 bits (71), Expect(3) = 8e-49
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1242 LHIARNPAFHSRTKHIGVQYHFV 1264
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 167 bits (423), Expect(3) = 4e-48
Identities = 89/203 (43%), Positives = 122/203 (60%), Gaps = 22/203 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML+ NK IQ +K+ LA +F+MKDLG K Y+
Sbjct: 988 LYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYL 1047
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+++L++FNM CK + T + KLS+ CP ++ E +EM +PYASAV SLM+ M+CTR
Sbjct: 1048 KKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTR 1107
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVG +SRYM+N G EHW A+KR+ +Y+ + AL G F + G+VD+D
Sbjct: 1108 PDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGS----EFTVRGYVDSD 1163
Query: 477 *SGDVDSMKSTNGYVFNLSDGHV 545
+GD+D KST GYVF L+ V
Sbjct: 1164 FAGDLDKRKSTTGYVFTLAGAAV 1186
Score = 39.7 bits (91), Expect(3) = 4e-48
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI I+RL + G K + + + CDS S H
Sbjct: 1201 TEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALH 1243
Score = 32.0 bits (71), Expect(3) = 4e-48
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1242 LHIARNPAFHSRTKHIGVQYHFV 1264
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 5e-47
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVWGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 5e-47
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 5e-47
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 164 bits (415), Expect(3) = 5e-47
Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 22/206 (10%)
Frame = +3
Query: 3 LYADDMLLIKNNKKTIQSVKSLLALQFDMKDLG*----------------------KKYI 116
LY DDML++ NK +Q +K+ LA +FDMKDLG K Y+
Sbjct: 984 LYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYL 1043
Query: 117 EEVLKKFNMIGCKLVETFMATETKLSADQCPKSKEEEEEMDNIPYASAVKSLMYEMVCTR 296
+VL++FNM CK + T + KLS+ P ++ E EM +PYASAV SLMY M+CTR
Sbjct: 1044 RKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTR 1103
Query: 297 PDIIQAVGVLSRYMSNYGKEHWTAIKRVYKYL*SNFDFALHLRGKGD*RNFEMVGFVDAD 476
PDI QAVGV+SR+M++ GKEHW A+KR+ +Y+ A+ G + G+VD+D
Sbjct: 1104 PDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS----ELTVRGYVDSD 1159
Query: 477 *SGDVDSMKSTNGYVFNLSDGHVKAL 554
+GD D KST GYVF L+ G V L
Sbjct: 1160 FAGDHDKRKSTTGYVFTLAGGAVSWL 1185
Score = 38.9 bits (89), Expect(3) = 5e-47
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 559 TEAEYMAFIHASKEAILIRRLCCKFGFK*KTVKLECDS*SDTH 687
TEAEYMA A KEAI ++RL + G K + + + CDS S H
Sbjct: 1197 TEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALH 1239
Score = 32.0 bits (71), Expect(3) = 5e-47
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 683 LTLTKNPTVHSWSKHIDIHYHFI 751
L + +NP HS +KHI + YHF+
Sbjct: 1238 LHIARNPAFHSRTKHIGVQYHFV 1260