BLASTX nr result

ID: Panax21_contig00009821 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00009821
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21551.3| unnamed protein product [Vitis vinifera]              207   5e-52
ref|XP_002278030.1| PREDICTED: RNA-binding protein 39-like [Viti...   207   5e-52
emb|CAN82467.1| hypothetical protein VITISV_002664 [Vitis vinifera]   194   5e-48
ref|XP_002310314.1| predicted protein [Populus trichocarpa] gi|2...   194   6e-48
ref|XP_004160482.1| PREDICTED: RNA-binding protein 39-like [Cucu...   186   2e-45

>emb|CBI21551.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  207 bits (528), Expect = 5e-52
 Identities = 102/144 (70%), Positives = 119/144 (82%)
 Frame = +3

Query: 3   LDRSGTATSFAGSLGAPVLYGSAPVQQSISMPINGAAFXXXXXXXGQIVTPMASEPIGNP 182
           LDR+G A+S AGSLG P+L GSAP QQ+IS+ ING A         Q+VT  ASEP+G P
Sbjct: 349 LDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTP 408

Query: 183 SECLLLKNMFDPSTEEDPEFDLDIKEDVQEECSNYGRVKHIHVDKNSAGYVYLRFENVEG 362
           +ECLLLKNMFDP+TE DP+FDLDIKE+VQEECSN+GRVKHI+V+K+SAGYVYLRFE VE 
Sbjct: 409 TECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEA 468

Query: 363 ASRAQQAMHQRWFARRMISAIFLQ 434
           A  AQ+AMH RWFARR+ISAIFLQ
Sbjct: 469 AVTAQRAMHMRWFARRLISAIFLQ 492


>ref|XP_002278030.1| PREDICTED: RNA-binding protein 39-like [Vitis vinifera]
          Length = 542

 Score =  207 bits (528), Expect = 5e-52
 Identities = 102/144 (70%), Positives = 119/144 (82%)
 Frame = +3

Query: 3   LDRSGTATSFAGSLGAPVLYGSAPVQQSISMPINGAAFXXXXXXXGQIVTPMASEPIGNP 182
           LDR+G A+S AGSLG P+L GSAP QQ+IS+ ING A         Q+VT  ASEP+G P
Sbjct: 387 LDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTP 446

Query: 183 SECLLLKNMFDPSTEEDPEFDLDIKEDVQEECSNYGRVKHIHVDKNSAGYVYLRFENVEG 362
           +ECLLLKNMFDP+TE DP+FDLDIKE+VQEECSN+GRVKHI+V+K+SAGYVYLRFE VE 
Sbjct: 447 TECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEA 506

Query: 363 ASRAQQAMHQRWFARRMISAIFLQ 434
           A  AQ+AMH RWFARR+ISAIFLQ
Sbjct: 507 AVTAQRAMHMRWFARRLISAIFLQ 530


>emb|CAN82467.1| hypothetical protein VITISV_002664 [Vitis vinifera]
          Length = 461

 Score =  194 bits (494), Expect = 5e-48
 Identities = 95/133 (71%), Positives = 110/133 (82%)
 Frame = +3

Query: 36  GSLGAPVLYGSAPVQQSISMPINGAAFXXXXXXXGQIVTPMASEPIGNPSECLLLKNMFD 215
           GSLG P+L GSAP QQ+IS+ ING A         Q+VT  ASEP+G P+ECLLLKNMFD
Sbjct: 317 GSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTPTECLLLKNMFD 376

Query: 216 PSTEEDPEFDLDIKEDVQEECSNYGRVKHIHVDKNSAGYVYLRFENVEGASRAQQAMHQR 395
           P+TE DP+FDLDIKE+VQEECSN+GRVKHI+V+K+SAGYVYLRFE VE A  AQ+AMH R
Sbjct: 377 PATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEAAVTAQRAMHMR 436

Query: 396 WFARRMISAIFLQ 434
           WFARR+ISAIFLQ
Sbjct: 437 WFARRLISAIFLQ 449


>ref|XP_002310314.1| predicted protein [Populus trichocarpa] gi|222853217|gb|EEE90764.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score =  194 bits (493), Expect = 6e-48
 Identities = 94/143 (65%), Positives = 114/143 (79%)
 Frame = +3

Query: 3   LDRSGTATSFAGSLGAPVLYGSAPVQQSISMPINGAAFXXXXXXXGQIVTPMASEPIGNP 182
           LDR+GTATS AGSLG P+L GSAP QQ+IS+P+NG            ++   A E IG P
Sbjct: 239 LDRTGTATSIAGSLGVPLLNGSAPNQQAISLPVNGQTNIGAAAFPALVLPSPAYESIGQP 298

Query: 183 SECLLLKNMFDPSTEEDPEFDLDIKEDVQEECSNYGRVKHIHVDKNSAGYVYLRFENVEG 362
           SECLLLKNMFDP+TE +P+FDLDIKEDV+EECS YG+VKHI VDKNSAG+VYL+F+++E 
Sbjct: 299 SECLLLKNMFDPATETEPDFDLDIKEDVEEECSRYGQVKHIWVDKNSAGHVYLQFDSMEA 358

Query: 363 ASRAQQAMHQRWFARRMISAIFL 431
           A+RAQ+AMH RWFARR I AIF+
Sbjct: 359 AARAQRAMHMRWFARRSILAIFM 381


>ref|XP_004160482.1| PREDICTED: RNA-binding protein 39-like [Cucumis sativus]
          Length = 598

 Score =  186 bits (471), Expect = 2e-45
 Identities = 92/144 (63%), Positives = 110/144 (76%)
 Frame = +3

Query: 3   LDRSGTATSFAGSLGAPVLYGSAPVQQSISMPINGAAFXXXXXXXGQIVTPMASEPIGNP 182
           LDR+G ATS AGSLGAPVL GSAP Q+S S+P+NG A            TP   + +G+P
Sbjct: 445 LDRTGIATSIAGSLGAPVLNGSAPNQRSTSLPVNGQAAVAAPVLPANF-TPPVLQSVGSP 503

Query: 183 SECLLLKNMFDPSTEEDPEFDLDIKEDVQEECSNYGRVKHIHVDKNSAGYVYLRFENVEG 362
           SECLLLKNMFDPSTE  P+FD++IKEDV+EECS YGRVKHI+VDKNSAG VYL+++ VE 
Sbjct: 504 SECLLLKNMFDPSTETAPDFDMEIKEDVEEECSKYGRVKHIYVDKNSAGCVYLQYDTVEA 563

Query: 363 ASRAQQAMHQRWFARRMISAIFLQ 434
           A  AQ+AMH RWFA R IS +F+Q
Sbjct: 564 AINAQRAMHLRWFAGRQISVLFMQ 587


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