BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00009703
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   576   e-162
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   570   e-160
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   569   e-160
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   561   e-157
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   557   e-156

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  576 bits (1484), Expect = e-162
 Identities = 286/316 (90%), Positives = 307/316 (97%)
 Frame = -1

Query: 1260 GASYQRFPTVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSTVL 1081
            GASYQRFP +KIRELKDDY KFELRDTDAS+ANALRRVMIAEVPTVAIDLVEIEVNS+VL
Sbjct: 3    GASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 1080 NDEFLAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLDVTS 901
            NDEF+AHRLGLIPLTSERAMSMRFSRDCDACDGDGQC++CSVEFHLRAKCI DQTLDVTS
Sbjct: 63   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTS 122

Query: 900  KDLYSSDHTVVPVDFSDSSGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 721
            KDLYSSDHTVVPVDFSDSSGY++SEQRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPA
Sbjct: 123  KDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182

Query: 720  ATVTFMYEPAIHINEDMMESLTLQEKQSFIDSSPTKVFDIDPETQQVKVVDAEAYTYDDE 541
            ATVTFMYEP IHINED+MESL+L+EKQS+++SSPTKVFDIDP TQQV VVD EAYTYD+E
Sbjct: 183  ATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEE 242

Query: 540  VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSDDTV 361
            V+KKAE+MGKPGLV I AKEDSFIFTVESTGAIKASQLVLNAI+ILKQKLDAVRLS+DTV
Sbjct: 243  VIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTV 302

Query: 360  EADEQFGELGAHMRGG 313
            EAD+QFGELGAHMRGG
Sbjct: 303  EADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  570 bits (1469), Expect = e-160
 Identities = 282/316 (89%), Positives = 306/316 (96%)
 Frame = -1

Query: 1260 GASYQRFPTVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSTVL 1081
            G SYQRFP +KIRE+KDDYAKFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIEVNS+VL
Sbjct: 3    GVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 1080 NDEFLAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLDVTS 901
            NDEF+AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC+ D+TLDVTS
Sbjct: 63   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTS 122

Query: 900  KDLYSSDHTVVPVDFSDSSGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 721
            KDL SSDHTVVPVDFSDSSGY++++++GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPA
Sbjct: 123  KDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182

Query: 720  ATVTFMYEPAIHINEDMMESLTLQEKQSFIDSSPTKVFDIDPETQQVKVVDAEAYTYDDE 541
            ATVTFMYEP IHINED+MESLTL+EK S+++SSPTKVFDID  +QQV V DAEAYTYDDE
Sbjct: 183  ATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDE 242

Query: 540  VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSDDTV 361
            VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAID+LKQKLDAVRLS+DTV
Sbjct: 243  VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTV 302

Query: 360  EADEQFGELGAHMRGG 313
            EAD+QFGELGAHMRGG
Sbjct: 303  EADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  569 bits (1466), Expect = e-160
 Identities = 281/316 (88%), Positives = 306/316 (96%)
 Frame = -1

Query: 1260 GASYQRFPTVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSTVL 1081
            G SYQRFP +KIRE+KDDYAKFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIEVNS+VL
Sbjct: 3    GVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 62

Query: 1080 NDEFLAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLDVTS 901
            NDEF+AHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEFCSVEFHLRAKC+ D+TLDVTS
Sbjct: 63   NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTS 122

Query: 900  KDLYSSDHTVVPVDFSDSSGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 721
            KDL SSDHTVVPVDFSDSSGY++++++GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPA
Sbjct: 123  KDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182

Query: 720  ATVTFMYEPAIHINEDMMESLTLQEKQSFIDSSPTKVFDIDPETQQVKVVDAEAYTYDDE 541
            ATVTFMYEP IHINED+MESLTL+EK S+++SSPTKVFDID  +QQV V DAEAYTYDDE
Sbjct: 183  ATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDE 242

Query: 540  VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSDDTV 361
            VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAID+LKQKLDAVRLS+DTV
Sbjct: 243  VLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTV 302

Query: 360  EADEQFGELGAHMRGG 313
            EAD+QFGELGAHMRGG
Sbjct: 303  EADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  561 bits (1446), Expect = e-157
 Identities = 281/319 (88%), Positives = 300/319 (94%)
 Frame = -1

Query: 1269 MEGGASYQRFPTVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 1090
            MEGG SY R P VKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 1089 TVLNDEFLAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLD 910
            +VLNDEF+AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC+ DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 909  VTSKDLYSSDHTVVPVDFSDSSGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKW 730
            VTSKDLYSSD TV PVDFSD S  ++   RGIIIVKLRRGQELKLRAIARKGIGKDHAKW
Sbjct: 121  VTSKDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 729  SPAATVTFMYEPAIHINEDMMESLTLQEKQSFIDSSPTKVFDIDPETQQVKVVDAEAYTY 550
            SPAATVTFMYEP IHINED+ME+LTL+EK+ ++DSSPT+VF+IDP TQQV VVDAEAYTY
Sbjct: 181  SPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTY 240

Query: 549  DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSD 370
            DDEVLKKAEAMGKPGLVEI A++DSFIFTVESTGA+KASQLVLNAI+ILKQKLDAVRLS+
Sbjct: 241  DDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSE 300

Query: 369  DTVEADEQFGELGAHMRGG 313
            DTVEAD+QFGELGAHMRGG
Sbjct: 301  DTVEADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 320

 Score =  557 bits (1435), Expect = e-156
 Identities = 281/320 (87%), Positives = 301/320 (94%), Gaps = 1/320 (0%)
 Frame = -1

Query: 1269 MEGGASYQRFPTVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 1090
            MEGG SY R P VKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 1089 TVLNDEFLAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTLD 910
            +VLNDEF+AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC+ DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 909  VTSKDLYSSDHTVVPVDFSDSSGYENSEQ-RGIIIVKLRRGQELKLRAIARKGIGKDHAK 733
            VTSKDLYSSD TV PVDFSD S  ++ +  RGIIIVKLRRGQELKLRAIARKGIGKDHAK
Sbjct: 121  VTSKDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 732  WSPAATVTFMYEPAIHINEDMMESLTLQEKQSFIDSSPTKVFDIDPETQQVKVVDAEAYT 553
            WSPAATVTFMYEP IHINED+ME+LTL+EK+ ++DSSPT+VF+IDP TQQV VVDAEAYT
Sbjct: 181  WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYT 240

Query: 552  YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLS 373
            YDDEVLKKAEAMGKPGLVEI A++DSFIFTVESTGA+KASQLVLNAI+ILKQKLDAVRLS
Sbjct: 241  YDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 300

Query: 372  DDTVEADEQFGELGAHMRGG 313
            +DTVEAD+QFGELGAHMRGG
Sbjct: 301  EDTVEADDQFGELGAHMRGG 320