BLASTX nr result
ID: Panax21_contig00009633
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00009633
(805 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514651.1| replication factor A 1, rfa1, putative [Rici... 157 2e-77
ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|2... 158 2e-77
ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-... 160 3e-77
emb|CBI15109.3| unnamed protein product [Vitis vinifera] 160 3e-77
emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera] 160 7e-77
>ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546255|gb|EEF47757.1| replication factor A 1,
rfa1, putative [Ricinus communis]
Length = 622
Score = 157 bits (398), Expect(3) = 2e-77
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +3
Query: 486 SLIKPDQSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECSLRYIMVAKVSDASGEAWL 665
S IKPDQSMWYRACKTCNKKVTEAIG G+WCEGCQKND ECSLRYIMV KVSDASGE W+
Sbjct: 474 SFIKPDQSMWYRACKTCNKKVTEAIGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWV 533
Query: 666 SSFNDQLEKILGCSADELDELKSQ 737
S+FN++ E+I+GCSADELD+LKSQ
Sbjct: 534 SAFNNEGERIIGCSADELDKLKSQ 557
Score = 106 bits (264), Expect(3) = 2e-77
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = +1
Query: 166 NLETPESKKLKSWYDSKGKECSMASVGSDLSPSTKSRFRSLYSDRVSLSHITSNPSLGEE 345
N +TPESKKLKSW+DS+GKE S+ASVG+ LSPSTKS S+YSDRVS+SHITSNPSLG +
Sbjct: 403 NPDTPESKKLKSWFDSEGKETSLASVGAGLSPSTKSGGGSMYSDRVSISHITSNPSLGSD 462
Query: 346 KPVFFSTKA 372
KP FFS +A
Sbjct: 463 KPAFFSIRA 471
Score = 73.2 bits (178), Expect(3) = 2e-77
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +2
Query: 2 KKNVVVSLWNELATNVGQELLDIADQSPVVAIKSLKVRDFTGVS 133
KK VVVSLWN+LAT+VGQELLD+AD+SPVVAIK+LKV DF GVS
Sbjct: 348 KKTVVVSLWNDLATDVGQELLDMADKSPVVAIKALKVGDFQGVS 391
>ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|222838845|gb|EEE77196.1|
predicted protein [Populus trichocarpa]
Length = 603
Score = 158 bits (399), Expect(3) = 2e-77
Identities = 69/91 (75%), Positives = 80/91 (87%)
Frame = +3
Query: 486 SLIKPDQSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECSLRYIMVAKVSDASGEAWL 665
S IKPDQ+MWYRACKTCNKKVT+A+G G+WCEGCQKND ECSLRYIMV KVSD SGE W+
Sbjct: 455 SFIKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEGWV 514
Query: 666 SSFNDQLEKILGCSADELDELKSQVKLNMQQ 758
S+FN++ EKI+GCSADELD LKSQ++ N Q
Sbjct: 515 SAFNEEAEKIIGCSADELDLLKSQIEENTYQ 545
Score = 105 bits (262), Expect(3) = 2e-77
Identities = 51/64 (79%), Positives = 58/64 (90%)
Frame = +1
Query: 181 ESKKLKSWYDSKGKECSMASVGSDLSPSTKSRFRSLYSDRVSLSHITSNPSLGEEKPVFF 360
ES+KL++WYDS+GKE SMASVGS LSPSTKS RS+YSDRVSLSHITSNPSLGE+KP FF
Sbjct: 389 ESEKLRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGEDKPAFF 448
Query: 361 STKA 372
S +A
Sbjct: 449 SIRA 452
Score = 73.6 bits (179), Expect(3) = 2e-77
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 2 KKNVVVSLWNELATNVGQELLDIADQSPVVAIKSLKVRDFTGVS 133
KK VVVSLWNELAT+VGQEL DIAD+SPVVAIKSLKV DF G+S
Sbjct: 329 KKTVVVSLWNELATSVGQELHDIADKSPVVAIKSLKVGDFQGIS 372
>ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Vitis vinifera]
Length = 625
Score = 160 bits (405), Expect(3) = 3e-77
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +3
Query: 486 SLIKPDQSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECSLRYIMVAKVSDASGEAWL 665
S IKPDQ+MWYRACKTCNKKVT+AIGSG+WCEGCQKND+ECSLRYIMV KVSDASGEAWL
Sbjct: 476 SFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWL 535
Query: 666 SSFNDQLEKILGCSADELDELKSQ 737
S FN+Q E++ GCSADELD+LKSQ
Sbjct: 536 SLFNEQAERMFGCSADELDKLKSQ 559
Score = 106 bits (265), Expect(3) = 3e-77
Identities = 49/69 (71%), Positives = 60/69 (86%)
Frame = +1
Query: 166 NLETPESKKLKSWYDSKGKECSMASVGSDLSPSTKSRFRSLYSDRVSLSHITSNPSLGEE 345
N +TPESKKL+SWYDS+GK SMAS+GSD+SPS+K +S+Y DRVSLSH+TSNPSLGE+
Sbjct: 405 NPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGED 464
Query: 346 KPVFFSTKA 372
KP FFS +A
Sbjct: 465 KPSFFSIRA 473
Score = 69.7 bits (169), Expect(3) = 3e-77
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +2
Query: 2 KKNVVVSLWNELATNVGQELLDIADQSPVVAIKSLKVRDFTGVSCLH*AKALL 160
KK VVVSLWN+ ATNVGQELLD AD+ P+VAIKSLKV DF GVS +K+++
Sbjct: 350 KKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIV 402
>emb|CBI15109.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 160 bits (405), Expect(3) = 3e-77
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +3
Query: 486 SLIKPDQSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECSLRYIMVAKVSDASGEAWL 665
S IKPDQ+MWYRACKTCNKKVT+AIGSG+WCEGCQKND+ECSLRYIMV KVSDASGEAWL
Sbjct: 453 SFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWL 512
Query: 666 SSFNDQLEKILGCSADELDELKSQ 737
S FN+Q E++ GCSADELD+LKSQ
Sbjct: 513 SLFNEQAERMFGCSADELDKLKSQ 536
Score = 106 bits (265), Expect(3) = 3e-77
Identities = 49/69 (71%), Positives = 60/69 (86%)
Frame = +1
Query: 166 NLETPESKKLKSWYDSKGKECSMASVGSDLSPSTKSRFRSLYSDRVSLSHITSNPSLGEE 345
N +TPESKKL+SWYDS+GK SMAS+GSD+SPS+K +S+Y DRVSLSH+TSNPSLGE+
Sbjct: 382 NPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGED 441
Query: 346 KPVFFSTKA 372
KP FFS +A
Sbjct: 442 KPSFFSIRA 450
Score = 69.7 bits (169), Expect(3) = 3e-77
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +2
Query: 2 KKNVVVSLWNELATNVGQELLDIADQSPVVAIKSLKVRDFTGVSCLH*AKALL 160
KK VVVSLWN+ ATNVGQELLD AD+ P+VAIKSLKV DF GVS +K+++
Sbjct: 327 KKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIV 379
>emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]
Length = 634
Score = 160 bits (405), Expect(3) = 7e-77
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +3
Query: 486 SLIKPDQSMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECSLRYIMVAKVSDASGEAWL 665
S IKPDQ+MWYRACKTCNKKVT+AIGSG+WCEGCQKND+ECSLRYIMV KVSDASGEAWL
Sbjct: 485 SFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWL 544
Query: 666 SSFNDQLEKILGCSADELDELKSQ 737
S FN+Q E++ GCSADELD+LKSQ
Sbjct: 545 SLFNEQAERMFGCSADELDKLKSQ 568
Score = 105 bits (262), Expect(3) = 7e-77
Identities = 49/69 (71%), Positives = 59/69 (85%)
Frame = +1
Query: 166 NLETPESKKLKSWYDSKGKECSMASVGSDLSPSTKSRFRSLYSDRVSLSHITSNPSLGEE 345
N +TPESKKL+SWYDS+GK SMAS+GSD+SPS+K S+Y DRVSLSH+TSNPSLGE+
Sbjct: 414 NPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVXSMYYDRVSLSHVTSNPSLGED 473
Query: 346 KPVFFSTKA 372
KP FFS +A
Sbjct: 474 KPSFFSIRA 482
Score = 69.7 bits (169), Expect(3) = 7e-77
Identities = 36/53 (67%), Positives = 43/53 (81%)
Frame = +2
Query: 2 KKNVVVSLWNELATNVGQELLDIADQSPVVAIKSLKVRDFTGVSCLH*AKALL 160
KK VVVSLWN+ ATNVGQELLD AD+ P+VAIKSLKV DF GVS +K+++
Sbjct: 359 KKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIV 411