BLASTX nr result

ID: Panax21_contig00008961 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008961
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513525.1| nucleic acid binding protein, putative [Rici...   121   2e-25
ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|2...   120   3e-25
emb|CAN62156.1| hypothetical protein VITISV_021251 [Vitis vinifera]   119   8e-25
ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containin...   117   4e-24
ref|XP_002298292.1| predicted protein [Populus trichocarpa] gi|2...   117   4e-24

>ref|XP_002513525.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223547433|gb|EEF48928.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 700

 Score =  121 bits (303), Expect = 2e-25
 Identities = 99/272 (36%), Positives = 124/272 (45%), Gaps = 42/272 (15%)
 Frame = -2

Query: 690 MDNNEATSTVMLRIQGLDPENACKIMGYILIHDPGEKEMIRLALGPETQLINLINQAKAX 511
           MD+ EAT  V  RIQ LDPENA KIMG +L+ D G+KEMIRLA GPET L NLI QAK  
Sbjct: 1   MDSYEATKMVFSRIQSLDPENASKIMGCLLLQDHGDKEMIRLAFGPETLLHNLILQAKTH 60

Query: 510 XXXXXXXXXXXXXXXXXXXXLHRLPVFPQP------APRIIIPNNGFNM-NPSSPSS-PW 355
                                   P   +P      + RI   NNGF++ NPSSPSS  W
Sbjct: 61  LGFSSNTPSTPSTPSSPSPFN---PTSSRPSSLSISSSRITSNNNGFDITNPSSPSSNSW 117

Query: 354 AQMSP---KPVSYAAVVNGTGTSPN-----------------PSFSHPFCNNTAGNE--- 244
             +SP     +SYA++VNGT  + +                 P ++    NN   N+   
Sbjct: 118 PLLSPNTTSSLSYASIVNGTSNNNSNTGSSSLSSTMSLSNAFPYYNSNSTNNNTSNDLID 177

Query: 243 -------FSEVFETKNLDFMDP----IMSPGGRSDSVLFPYGNCNENHHHNPHRRSVSVS 97
                  FS + ++K  +  DP     MSP    D+ L              HRRS SV 
Sbjct: 178 EYQLQDHFSFLNDSKTDELFDPRLDLAMSPTAYGDTHL--------------HRRSFSVP 223

Query: 96  DVFLXXXXXXXXXXXGWRPCMYFNRGFCKNGS 1
              L           GW+PC+YF RGFCKNG+
Sbjct: 224 G--LCFGSEDANSGLGWKPCLYFARGFCKNGT 253


>ref|XP_002313352.1| predicted protein [Populus trichocarpa] gi|222849760|gb|EEE87307.1|
           predicted protein [Populus trichocarpa]
          Length = 685

 Score =  120 bits (302), Expect = 3e-25
 Identities = 98/260 (37%), Positives = 121/260 (46%), Gaps = 30/260 (11%)
 Frame = -2

Query: 690 MDNNEATSTVMLRIQGLDPENACKIMGYILIHDPGEKEMIRLALGPETQLINLINQAKAX 511
           MD+ EAT+ V  RIQ L+PENA KIMGY+L+ D GEKEMIRLA GPET L NLI Q K  
Sbjct: 1   MDSYEATNIVFSRIQSLEPENASKIMGYLLLQDYGEKEMIRLAFGPETLLQNLILQTKTQ 60

Query: 510 XXXXXXXXXXXXXXXXXXXXLHRLPVFPQPAPRIIIPNNGFNM-NPSSPS-SPWAQMSPK 337
                                  L +     P     NNGF++ N SSPS + W  +SP 
Sbjct: 61  LGFPSNTPSTPSPAFIPSSRPSPLYISSSRIPN----NNGFDITNSSSPSTNSWPLLSPN 116

Query: 336 ---PVSYAAVVNG--------TGTSPNPSFSHPFC---NNTAGNE----------FSEVF 229
               +SYA+VVNG        T   P  S S  F    NN   N+          FS + 
Sbjct: 117 STTSLSYASVVNGASNINAGSTPFQPTVSLSKAFSYSNNNDNANDLVDEYELQERFSFLN 176

Query: 228 ETKNLDFMDP----IMSPGGRSDSVLFPYGNCNENHHHNPHRRSVSVSDVFLXXXXXXXX 61
           ++K  D  DP     MSP    D+ L              H+RS SV    +        
Sbjct: 177 DSKTDDLFDPRGELAMSPPAFGDNSL--------------HKRSFSVPG--MCFGSEDSN 220

Query: 60  XXXGWRPCMYFNRGFCKNGS 1
              GW+PC+YF+RGFCKNG+
Sbjct: 221 SGFGWKPCLYFSRGFCKNGT 240


>emb|CAN62156.1| hypothetical protein VITISV_021251 [Vitis vinifera]
          Length = 697

 Score =  119 bits (298), Expect = 8e-25
 Identities = 98/252 (38%), Positives = 116/252 (46%), Gaps = 22/252 (8%)
 Frame = -2

Query: 690 MDNNEATSTVMLRIQGLDPENACKIMGYI-LIHDPGEKEMIRLALGPETQLINLINQAKA 514
           MD+ EAT  V  RIQ LDPENA KIMGYI LI D GEKEMIRLA GPET L NLI +AK 
Sbjct: 1   MDSYEATRIVFSRIQALDPENASKIMGYILLIQDHGEKEMIRLAFGPETLLHNLILKAKT 60

Query: 513 XXXXXXXXXXXXXXXXXXXXXLHRLPVFPQPAPRIIIPNNGFNMNPSSPSSPWAQM-SPK 337
                                    P  P   P  +  NNGFN + S P S ++ + SP 
Sbjct: 61  QLGILSNTPSTPTSPS---------PFNPISKPTRLPTNNGFNPSSSWPVSGFSDLRSPN 111

Query: 336 ----PVSYAAVVNGT------GTSPNPSFSHPFCNNTAGNEFSEVFETKN---------- 217
                +SYAAVVNG       GT  +   S P+ NN +G+  S V    N          
Sbjct: 112 STTAQLSYAAVVNGATNVSDLGTVSSSPASIPYYNNCSGSNNSSVVCNDNVMDDYQLQDH 171

Query: 216 LDFMDPIMSPGGRSDSVLFPYGNCNENHHHNPHRRSVSVSDVFLXXXXXXXXXXXGWRPC 37
           L F++    P    D  L              HRRS S +D              GW+PC
Sbjct: 172 LSFLNDASKPEDLFDPRL-ELAMSPSFGETQLHRRSYSFNDA--CYGSDDGASGFGWKPC 228

Query: 36  MYFNRGFCKNGS 1
           +YF RGFCKNG+
Sbjct: 229 LYFARGFCKNGN 240


>ref|XP_002274487.1| PREDICTED: zinc finger CCCH domain-containing protein 53-like
           [Vitis vinifera]
          Length = 695

 Score =  117 bits (292), Expect = 4e-24
 Identities = 97/252 (38%), Positives = 115/252 (45%), Gaps = 22/252 (8%)
 Frame = -2

Query: 690 MDNNEATSTVMLRIQGLDPENACKIMGYI-LIHDPGEKEMIRLALGPETQLINLINQAKA 514
           MD+ EAT  V  RIQ LDPENA KIMGYI LI D GEKEMIRLA GPET L NLI +AK 
Sbjct: 1   MDSYEATRIVFSRIQALDPENASKIMGYILLIQDHGEKEMIRLAFGPETLLHNLILKAKT 60

Query: 513 XXXXXXXXXXXXXXXXXXXXXLHRLPVFPQPAPRIIIPNNGFNMNPSSPSSPWAQM-SPK 337
                                    P  P   P  +  NNGFN + S P S ++ + SP 
Sbjct: 61  QLGILSNTPSTPTSPS---------PFNPISKPTRLPTNNGFNPSSSWPVSGFSDLRSPN 111

Query: 336 ----PVSYAAVVNGT------GTSPNPSFSHPFCNNTAGNEFSEVFETKN---------- 217
                +SYAAVVNG       GT  +   S P+ NN + +  S V    N          
Sbjct: 112 STTAQLSYAAVVNGATNVSDLGTVSSSPASIPYYNNCSSSNNSSVVCNDNVMDDYQLQDH 171

Query: 216 LDFMDPIMSPGGRSDSVLFPYGNCNENHHHNPHRRSVSVSDVFLXXXXXXXXXXXGWRPC 37
           L F++    P    D  L              HRRS S +D              GW+PC
Sbjct: 172 LSFLNDASKPEDLFDPRL-ELAMSPSFGETQLHRRSYSFNDA--CYGSDDGASGFGWKPC 228

Query: 36  MYFNRGFCKNGS 1
           +YF RGFCKNG+
Sbjct: 229 LYFARGFCKNGN 240


>ref|XP_002298292.1| predicted protein [Populus trichocarpa] gi|222845550|gb|EEE83097.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score =  117 bits (292), Expect = 4e-24
 Identities = 91/247 (36%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
 Frame = -2

Query: 690 MDNNEATSTVMLRIQGLDPENACKIMGYILIHDPGEKEMIRLALGPETQLINLINQAKAX 511
           MD+ EA + V  RIQ L+PENA KIMGY+L+ D GEKEMIR A GPET L NLI  AK  
Sbjct: 1   MDSYEAANMVFSRIQNLEPENASKIMGYLLLQDYGEKEMIRFAFGPETLLHNLILYAKTQ 60

Query: 510 XXXXXXXXXXXXXXXXXXXXLHRLPVFPQPAPR-IIIP------NNGFNM-NPSSPS-SP 358
                                   P  P   P  + IP      NNGF++ NPSSPS + 
Sbjct: 61  LGFLSNKTSSS-------------PFIPSSRPSPLSIPSSRITNNNGFDITNPSSPSTNS 107

Query: 357 WAQMSP---KPVSYAAVVNGTGTSPNPSFSHPFCNNTAGNEFSEVFETKNLDFMDPIMSP 187
           W   +P    P+SYA+VVNG  +            N +   F       N          
Sbjct: 108 WHFSTPNSTSPLSYASVVNGASSI-----------NASSTPFQPTVSLSN---------- 146

Query: 186 GGRSDSVLFPYGNCNENH-----HHNPHRRSVSVSDVFLXXXXXXXXXXXGWRPCMYFNR 22
                   FPY N N         +  H+RS SV D  +           GW+PC+YF+R
Sbjct: 147 -------AFPYSNNNTTSPTKYGDNGSHKRSFSVPDTCV--GSEDSNSGFGWKPCLYFSR 197

Query: 21  GFCKNGS 1
           GFCKNGS
Sbjct: 198 GFCKNGS 204


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