BLASTX nr result
ID: Panax21_contig00008953
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00008953
(2048 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 543 e-152
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 513 e-143
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 510 e-142
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2... 503 e-140
emb|CAD20832.1| sigma factor [Spinacia oleracea] 484 e-134
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 543 bits (1398), Expect = e-152
Identities = 303/599 (50%), Positives = 386/599 (64%), Gaps = 12/599 (2%)
Frame = +1
Query: 211 IGMGFRLNLKWVFSVQSPSLTNSATWPSSYSFRGMEGSYDSARISFSSIVSGESEALYND 390
+GMGFRLNLKW F + P+LTNS + + S +G E S+DS R SF S+ S + E+LY D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 391 PLRAHICSSAA-QTLSNDYTETEQIKVPLCLRCS*EVVNIRTSPPIFIACYLVCDI*VLI 567
P + CSS A QT NDY+ E +K+
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKM--------------------------------- 87
Query: 568 TQVNVRKRSCGGIYNLINDNIQMSAREDQSTFLTSLQTSKTSHFRVLMNNLNMLEKTFAD 747
+ K S G ++ ++N + Q ED S + LQ SK S F +L+ NL++LE+ FAD
Sbjct: 88 ---KIGKCSHGDLFKIVNAS-QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFAD 143
Query: 748 SDMVRLERDILVQLERLGALNLFHAFLSRN-RSPTLVDLSDTSTESIEELHMNKHVDESM 924
S+MVRLERDI+VQL RLGAL LF LSR ++ T DL TE I E N VD+ +
Sbjct: 144 SNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHL 203
Query: 925 AEIVVHSGXXXXXXXXXXXXXXXXXX---------TNHEDP-QQQMSFSRRSLKYNGRKP 1074
++VV SG T + P + +S +R+L ++
Sbjct: 204 DKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRL 263
Query: 1075 KITRNEAEMSRGIQLLAKLERIRMILEEETGQAASLGSWAEAAGVDKKTLQQNLYFGWYC 1254
+NEAEMS+G++L+A LERIR LEEE G ASL +WAEAAGVDKK LQQ L FGWYC
Sbjct: 264 MNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYC 323
Query: 1255 RDELLRSTRSLIMYLARNYRSVGVAFDDLIQAGSFGVLQGAERFDHTRGYKFSTYIQYWI 1434
RDELLRST SL++Y+ARNYR +GVAF+D++QAG+ GVLQGAERFDHT+GY+FSTY+QYWI
Sbjct: 324 RDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWI 383
Query: 1435 RKSMLMLVERNARGVRIPFALSKAINKIQKARKTLGNSLGKYPDDDEIAKFTGLSLPKIA 1614
RKSM LV R+ARGV+IPF L++AI +IQKARK L S G+YPDD+EIAKFTGLSL KI
Sbjct: 384 RKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIR 443
Query: 1615 SAGKCPRVVGSLDQKIGDFTSAKFLELTPDTSIKNPEETVIRQHMIKDLNNLLNALDPKE 1794
SAG C RVVGS DQ D A LE TPDTSIK+PEE ++Q KD++NLL LDP+E
Sbjct: 444 SAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRE 503
Query: 1795 RQVLLLRFGLRDHQCKSLQEIGRLFCVSKEWIRKIERTALTKLRERETTLHSLNHYLNM 1971
RQ+L+LR+G + Q KSL+EIGR F VSKEWIRK+E+TAL LR+ E +L HY+++
Sbjct: 504 RQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEE-ICQNLRHYVDV 561
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 513 bits (1321), Expect = e-143
Identities = 290/603 (48%), Positives = 391/603 (64%), Gaps = 17/603 (2%)
Frame = +1
Query: 211 IGMGFRLNLKWVFSVQSP-SLTNSATWPSSYSFRGMEGSYDSARISFSSIVSGESEALYN 387
+G GFRLNLK F SP S + ++ PSS RG E + +R+SF S++S E + +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 388 DPLRAHICSSAAQTLSNDYTETEQIKVPLCLRCS*EVVNIRTSPPIFIACYLVCDI*VLI 567
DPL+ + S A QT+ N++++ E KV
Sbjct: 61 DPLKTYAYSYAVQTVENEHSQGEGFKV--------------------------------- 87
Query: 568 TQVNVRKRSCGGIYNLINDNIQMSAREDQSTFLTSLQTS-KTSHFRVLMNNLNMLEKTFA 744
N KRS G+ N+I D ++S +ED F++ T +TS F +L+ NLN+LE++FA
Sbjct: 88 ---NFGKRSHFGL-NIIGD-AEVSLKED--IFVSPSSTKERTSRFSLLLENLNILEQSFA 140
Query: 745 DSDMVRLERDILVQLERLGALNLFHAFLSRNRSPT-LVDLSDTSTESIEELHMNKHVDES 921
DSD +LE DIL+QL +LGAL LF+ L+R T ++++SD TE I E ++N +
Sbjct: 141 DSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINN 200
Query: 922 MAEIVVHSGXXXXXXXXXXXXXXXXXXTNHEDP--------------QQQMSFSRRSLKY 1059
++VVH+ H+ P + +S +++ K
Sbjct: 201 QIKVVVHTA---KKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKS 257
Query: 1060 NGRKPKITRNEAEMSRGIQLLAKLERIRMILEEETGQAASLGSWAEAAGVDKKTLQQNLY 1239
R+ I RNEAEM+RGI++LA LE+IR LEEET + SL WAEAAG+D K LQQ L
Sbjct: 258 KSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLS 317
Query: 1240 FGWYCRDELLRSTRSLIMYLARNYRSVGVAFDDLIQAGSFGVLQGAERFDHTRGYKFSTY 1419
FGWYCRDEL++STRSL++Y ARNYR G+A +DL+QAG+ GVL+GAERFDHTRGY+FSTY
Sbjct: 318 FGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTY 377
Query: 1420 IQYWIRKSMLMLVERNARGVRIPFALSKAINKIQKARKTLGNSLGKYPDDDEIAKFTGLS 1599
+QYWIRKSM +V R ARG++IP LS+AI +IQKARK L S GKYPDDDEIAK+TGLS
Sbjct: 378 VQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLS 437
Query: 1600 LPKIASAGKCPRVVGSLDQKIGDFTSAKFLELTPDTSIKNPEETVIRQHMIKDLNNLLNA 1779
L KI SA +C RVVGS+DQKIG+ +AK+LE PDTS+++PEE V+RQHMI+D++NLL +
Sbjct: 438 LAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRS 497
Query: 1780 LDPKERQVLLLRFGLRDHQCKSLQEIGRLFCVSKEWIRKIERTALTKLRERETTLHSLNH 1959
LD +ERQVL+LRFGL D+Q KSL+EIGR F VSKEW+R++E+ +T+LR E T +L H
Sbjct: 498 LDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEE-TCRNLRH 556
Query: 1960 YLN 1968
Y+N
Sbjct: 557 YIN 559
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 510 bits (1313), Expect = e-142
Identities = 286/567 (50%), Positives = 364/567 (64%), Gaps = 12/567 (2%)
Frame = +1
Query: 307 RGMEGSYDSARISFSSIVSGESEALYNDPLRAHICSSAA-QTLSNDYTETEQIKVPLCLR 483
+G E S+DS R SF S+ S + E+LY DP + CSS A QT NDY+ E +K+
Sbjct: 83 QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKM----- 137
Query: 484 CS*EVVNIRTSPPIFIACYLVCDI*VLITQVNVRKRSCGGIYNLINDNIQMSAREDQSTF 663
+ K S G ++ ++N + Q ED S
Sbjct: 138 -------------------------------KIGKCSHGDLFKIVNAS-QAPIGEDISAS 165
Query: 664 LTSLQTSKTSHFRVLMNNLNMLEKTFADSDMVRLERDILVQLERLGALNLFHAFLSRN-R 840
+ LQ SK S F +L+ NL++LE+ FADS+MVRLERDI+VQL RLGAL LF LSR +
Sbjct: 166 VAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLK 225
Query: 841 SPTLVDLSDTSTESIEELHMNKHVDESMAEIVVHSGXXXXXXXXXXXXXXXXXX------ 1002
+ T DL TE I E N VD+ + ++VV SG
Sbjct: 226 TSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPL 285
Query: 1003 ---TNHEDP-QQQMSFSRRSLKYNGRKPKITRNEAEMSRGIQLLAKLERIRMILEEETGQ 1170
T + P + +S +R+L ++ +NEAEMS+G++L+A LERIR LEEE G
Sbjct: 286 PSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGH 345
Query: 1171 AASLGSWAEAAGVDKKTLQQNLYFGWYCRDELLRSTRSLIMYLARNYRSVGVAFDDLIQA 1350
ASL +WAEAAGVDKK LQQ L FGWYCRDELLRST SL++Y+ARNYR +GVAF+D++QA
Sbjct: 346 VASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQA 405
Query: 1351 GSFGVLQGAERFDHTRGYKFSTYIQYWIRKSMLMLVERNARGVRIPFALSKAINKIQKAR 1530
G+ GVLQGAERFDHT+GY+FSTY+QYWIRKSM LV R+ARGV+IPF L++AI +IQKAR
Sbjct: 406 GNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKAR 465
Query: 1531 KTLGNSLGKYPDDDEIAKFTGLSLPKIASAGKCPRVVGSLDQKIGDFTSAKFLELTPDTS 1710
K L S G+YPDD+EIAKFTGLSL KI SAG C RVVGS DQ D A LE TPDTS
Sbjct: 466 KALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTS 525
Query: 1711 IKNPEETVIRQHMIKDLNNLLNALDPKERQVLLLRFGLRDHQCKSLQEIGRLFCVSKEWI 1890
IK+PEE ++Q KD++NLL LDP+ERQ+L+LR+G + Q KSL+EIGR F VSKEWI
Sbjct: 526 IKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWI 585
Query: 1891 RKIERTALTKLRERETTLHSLNHYLNM 1971
RK+E+TAL LR+ E +L HY+++
Sbjct: 586 RKLEKTALANLRDEE-ICQNLRHYVDV 611
>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
predicted protein [Populus trichocarpa]
Length = 559
Score = 503 bits (1295), Expect = e-140
Identities = 286/595 (48%), Positives = 384/595 (64%), Gaps = 10/595 (1%)
Frame = +1
Query: 211 IGMGFRLNLKWVFSVQSPSLTNSATWPSSYSFRGMEGSYDSARISFSSIVSGESEALYND 390
+G+GFRL KW +QS S TNS + SS+S RGME S + AR+SF S+VS E + L
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 391 PLRAHICSSAAQTLSNDYTETEQIKVPLCLRCS*EVVNIRTSPPIFIACYLVCDI*VLIT 570
++ CSSAAQ + ND + E++K+
Sbjct: 61 SFKSFACSSAAQNVENDCLQMERLKM---------------------------------- 86
Query: 571 QVNVRKRSCGGIYNLINDNIQMSAREDQSTFLTSLQTSKTSHFRVLMNNLNMLEKTFADS 750
NV K S I N++ N ++S E+ ST T L+ TS L++NL+ LEK AD
Sbjct: 87 --NVDKTSHVSINNMMG-NDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKLVADL 143
Query: 751 DMVRLERDILVQLERLGALNLFHAFLSRN-RSPTLVDLSDTSTESIEELHMNKHVDESMA 927
D ++LERDIL+QL RLGAL F+A LSR ++ ++DLS TE+ E + + +
Sbjct: 144 DALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKTDGMLGDLTG 203
Query: 928 EIVVHSG--XXXXXXXXXXXXXXXXXXTNHEDPQQQM-------SFSRRSLKYNGRKPKI 1080
+ VV +G T+ P + + +F +R+ + R+ I
Sbjct: 204 KTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSSSSSRRSLI 263
Query: 1081 TRNEAEMSRGIQLLAKLERIRMILEEETGQAASLGSWAEAAGVDKKTLQQNLYFGWYCRD 1260
RNEA+M+RG+++ + LERIR LEEETGQ SL WAEA G+DKK LQQ L FGWYCRD
Sbjct: 264 ARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRD 323
Query: 1261 ELLRSTRSLIMYLARNYRSVGVAFDDLIQAGSFGVLQGAERFDHTRGYKFSTYIQYWIRK 1440
EL+++T SL++Y+ARNYR +G+A +DLIQAG+ G+LQGAERFD TRGY+FSTY+QYWIRK
Sbjct: 324 ELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRK 383
Query: 1441 SMLMLVERNARGVRIPFALSKAINKIQKARKTLGNSLGKYPDDDEIAKFTGLSLPKIASA 1620
SML +VER+ARG++IP+ALS++INKIQKARK L NS G+YPDD E+AKFTGLSL KI SA
Sbjct: 384 SMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESA 443
Query: 1621 GKCPRVVGSLDQKIGDFTSAKFLELTPDTSIKNPEETVIRQHMIKDLNNLLNALDPKERQ 1800
KC RVV SLDQKIG+ AK+ E PD SI+NPEE V+RQHM +++ +LL LD +E+Q
Sbjct: 444 QKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQ 503
Query: 1801 VLLLRFGLRDHQCKSLQEIGRLFCVSKEWIRKIERTALTKLRERETTLHSLNHYL 1965
V++LR+G +D+Q KSL EIGRLF VSKE +RKIE+ + KLR+ E +L+ Y+
Sbjct: 504 VMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRD-EGIRRNLSRYM 557
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 484 bits (1246), Expect = e-134
Identities = 277/599 (46%), Positives = 374/599 (62%), Gaps = 12/599 (2%)
Frame = +1
Query: 211 IGMGFRLNLKWVF--SVQSPSLTNSATWPSSYSFRGMEGSYDSARISFSSIVSGESEALY 384
+G G +LN+ S++SP TNS+ P S SFRG E + SAR+S +I ESE L
Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSP-PCSTSFRGKELDFGSARLSLLTIGFDESETLR 59
Query: 385 NDPLRAHICSSAAQ-TLSNDYTETEQIKVPLCLRCS*EVVNIRTSPPIFIACYLVCDI*V 561
D LR H SS+ T+ NDY+ E
Sbjct: 60 KDTLRPHAGSSSVPLTVENDYSNLE----------------------------------- 84
Query: 562 LITQVNVRKRSCGGIYNLINDNIQMSAREDQSTFLTSLQTSKTSHFRVLMNNLNMLEKTF 741
+ KRSC +LI+D +S R D S ++ S+Q+ SHF LM N+N+LE
Sbjct: 85 ----TTISKRSCK---DLISDTEVLSDR-DVSVYVRSVQSCSASHFHTLMANINLLENKV 136
Query: 742 ADSDMVRLERDILVQLERLGALNLFHAFLSRNRSPTLVDLSDTSTESIEELHMNKHVDES 921
+DS++++LE+DILVQL RLGAL LFHA LSR ++D+SD E+ N D
Sbjct: 137 SDSELLKLEKDILVQLGRLGALQLFHACLSR-----IIDMSDLPGLITEDGKANVRKDNE 191
Query: 922 MAEIVVHSGXXXXXXXXXXXXXXXXXXTN---------HEDPQQQMSFSRRSLKYNGRKP 1074
+ + +V S +S + + K GR+
Sbjct: 192 LKKKLVFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRA 251
Query: 1075 KITRNEAEMSRGIQLLAKLERIRMILEEETGQAASLGSWAEAAGVDKKTLQQNLYFGWYC 1254
I +NEAEMSRGI+++A+LE++++ LE+ETG+A SL WAEAAG+D+K LQ +L+FGWYC
Sbjct: 252 IIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYC 311
Query: 1255 RDELLRSTRSLIMYLARNYRSVGVAFDDLIQAGSFGVLQGAERFDHTRGYKFSTYIQYWI 1434
RDELL+S RSL++YL+R YR +GVA +DL+QAG+ G+LQGAERFDHTRGY+FSTY+QYWI
Sbjct: 312 RDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWI 371
Query: 1435 RKSMLMLVERNARGVRIPFALSKAINKIQKARKTLGNSLGKYPDDDEIAKFTGLSLPKIA 1614
RK+M LV R+ RG+++P LS IN++QKARK L S GK+PDD E++K TGLSL KI
Sbjct: 372 RKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIK 431
Query: 1615 SAGKCPRVVGSLDQKIGDFTSAKFLELTPDTSIKNPEETVIRQHMIKDLNNLLNALDPKE 1794
SA C R+VGSLDQK+G F + K+LE TPDT+++ PE+TV++QHM D++ LL LDPKE
Sbjct: 432 SADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKE 491
Query: 1795 RQVLLLRFGLRDHQCKSLQEIGRLFCVSKEWIRKIERTALTKLRERETTLHSLNHYLNM 1971
R+VL+ R+GL H C SL E+G++F VSKEWIRK+E+ ALTKLR E +L HYLN+
Sbjct: 492 RRVLIHRYGLEGH-CMSLHEVGKVFDVSKEWIRKMEKRALTKLR-TEQNQTNLKHYLNL 548