BLASTX nr result

ID: Panax21_contig00008948 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008948
         (1229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264701.2| PREDICTED: DEAD-box ATP-dependent RNA helica...   538   e-150
gb|ADG27844.1| RNA helicase-like protein [Gossypium hirsutum]         536   e-150
ref|XP_004171505.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   498   e-138
ref|XP_002326399.1| predicted protein [Populus trichocarpa] gi|2...   498   e-138
ref|XP_004150128.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   498   e-138

>ref|XP_002264701.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Vitis
            vinifera] gi|297740016|emb|CBI30198.3| unnamed protein
            product [Vitis vinifera]
          Length = 473

 Score =  538 bits (1385), Expect = e-150
 Identities = 272/359 (75%), Positives = 308/359 (85%)
 Frame = -2

Query: 1078 KRLWGDEVDDEPESPSTSEDKELKLDSLKIDETKKANEFLDDPEDSNIKAVTSGDTPYTS 899
            K+LWGD V+D+P S S++   +L ++SL I +  K  E LD+P+DS+I+AVTSGDTPYTS
Sbjct: 9    KQLWGD-VEDDPPSSSSTPAVDLPVESLTIHDEAKEAESLDEPKDSSIQAVTSGDTPYTS 67

Query: 898  AKRFEDLSLSPELLKGLYVEMKFERPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCFV 719
            A  FEDL+LSPELL+G+Y EMKFERPSKIQAISLPMILTPP+KNLIAQAHNGSGKTTCFV
Sbjct: 68   ASTFEDLNLSPELLRGIYSEMKFERPSKIQAISLPMILTPPYKNLIAQAHNGSGKTTCFV 127

Query: 718  LGMLSRVDPTFAAPQALCICPTRELAIQNMEVLERMGKFTGITSELAIPTDSANYVPIQK 539
            LGMLSRVDP    PQALCICPTRELAIQN+EVL +MGK TGI SE AIP DSANY  I +
Sbjct: 128  LGMLSRVDPKLQVPQALCICPTRELAIQNLEVLRKMGKHTGIESECAIPMDSANYTSISQ 187

Query: 538  RAPVNKQVVIGTPGTINKWITARKLGMSSMKVLVFDEADHMLAESGFKDDSLRIMKAIVK 359
            R PV  QVVIGTPGT+ KW++ RKLG+S+MK+LVFDEADHMLAE GFKDDSLRIMKAI K
Sbjct: 188  RPPVKAQVVIGTPGTVKKWMSHRKLGISNMKILVFDEADHMLAEDGFKDDSLRIMKAIEK 247

Query: 358  SNPDCQVLLFSATFNDAVKAFIEKIVKEIFVKDYNQMFVNKEELSLDSVKQYKVNCPDEL 179
            S   CQVLLFSATFND VK F+ +I     VKDYNQMFV KEELSL SVKQYKV CPDEL
Sbjct: 248  SGAQCQVLLFSATFNDTVKNFVTRI-----VKDYNQMFVKKEELSLQSVKQYKVKCPDEL 302

Query: 178  SKIMVIKDKIFELGQKLGQTIIFVRTRNSASILHKALVEYGYEVTTIQGALKQDDRDKI 2
            SKI+VIKDKIFE+GQKLGQTIIFVRT+NSA +LHKALV++GYEVTTIQGAL+Q+DRDKI
Sbjct: 303  SKILVIKDKIFEIGQKLGQTIIFVRTKNSAGMLHKALVDFGYEVTTIQGALRQEDRDKI 361


>gb|ADG27844.1| RNA helicase-like protein [Gossypium hirsutum]
          Length = 501

 Score =  536 bits (1382), Expect = e-150
 Identities = 272/360 (75%), Positives = 313/360 (86%), Gaps = 4/360 (1%)
 Frame = -2

Query: 1069 WGDEVDDEPESPST-SEDK---ELKLDSLKIDETKKANEFLDDPEDSNIKAVTSGDTPYT 902
            W D  D+  E PS  SEDK   EL +++LKIDE+KK N+FLD+PEDSNIKAVT+G+TPYT
Sbjct: 34   WADLEDEASEEPSALSEDKGAPELGVENLKIDESKKINKFLDEPEDSNIKAVTAGETPYT 93

Query: 901  SAKRFEDLSLSPELLKGLYVEMKFERPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCF 722
            SA  FE+L+LSPELLKGLYVEMKFE+PSKIQAISLPMILTPPH +LIAQAHNGSGKTTCF
Sbjct: 94   SAFTFEELNLSPELLKGLYVEMKFEKPSKIQAISLPMILTPPHLDLIAQAHNGSGKTTCF 153

Query: 721  VLGMLSRVDPTFAAPQALCICPTRELAIQNMEVLERMGKFTGITSELAIPTDSANYVPIQ 542
             LGMLSRVDP   APQALCICPTRELAIQN+EVL +MGK TGITSE AIP DS+NY+PI 
Sbjct: 154  TLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAIPMDSSNYIPIN 213

Query: 541  KRAPVNKQVVIGTPGTINKWITARKLGMSSMKVLVFDEADHMLAESGFKDDSLRIMKAIV 362
            KRAP+  QVVIGTPGTI KW++A+KLG+S++KVLVFDEADHMLAE GFKDDSLRIM+ I 
Sbjct: 214  KRAPIIAQVVIGTPGTIKKWMSAKKLGVSNVKVLVFDEADHMLAEDGFKDDSLRIMRDIE 273

Query: 361  KSNPDCQVLLFSATFNDAVKAFIEKIVKEIFVKDYNQMFVNKEELSLDSVKQYKVNCPDE 182
            K +  CQVLLFSATF+D VK F+ KIVK    +D+NQ+FV KEELSL+SVKQYKVN PDE
Sbjct: 274  KMSSHCQVLLFSATFSDTVKNFVSKIVK----RDHNQLFVKKEELSLESVKQYKVNVPDE 329

Query: 181  LSKIMVIKDKIFELGQKLGQTIIFVRTRNSASILHKALVEYGYEVTTIQGALKQDDRDKI 2
            LSK++VIKD+I E G++LGQTIIFVRTRNSAS+LHKALVE+GY+VTTIQGAL Q +RDKI
Sbjct: 330  LSKVLVIKDRILEFGERLGQTIIFVRTRNSASMLHKALVEFGYDVTTIQGALNQAERDKI 389


>ref|XP_004171505.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Cucumis
            sativus]
          Length = 508

 Score =  498 bits (1283), Expect = e-138
 Identities = 254/360 (70%), Positives = 298/360 (82%), Gaps = 1/360 (0%)
 Frame = -2

Query: 1078 KRLWGDEVDDEP-ESPSTSEDKELKLDSLKIDETKKANEFLDDPEDSNIKAVTSGDTPYT 902
            KR WGDE DD+  ES  +S      L+SLKI +       L++P DSNI AVT+GDTPY+
Sbjct: 37   KRAWGDEEDDDVVESGDSSSAPSEYLESLKIQDDTN----LEEPIDSNITAVTTGDTPYS 92

Query: 901  SAKRFEDLSLSPELLKGLYVEMKFERPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCF 722
            SA  FEDL+LS ELLKGLYVEMKF +PSKIQAISLPMILTPP+K+LIAQAHNGSGKTTCF
Sbjct: 93   SASTFEDLNLSKELLKGLYVEMKFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCF 152

Query: 721  VLGMLSRVDPTFAAPQALCICPTRELAIQNMEVLERMGKFTGITSELAIPTDSANYVPIQ 542
            VLGMLSRVD    APQA CICPTRELA+QN+EVL++MGK+TGITSE A+P DSANY+P+ 
Sbjct: 153  VLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYIPMS 212

Query: 541  KRAPVNKQVVIGTPGTINKWITARKLGMSSMKVLVFDEADHMLAESGFKDDSLRIMKAIV 362
            KR P+  QVVIGTPGTI KW+++RKLG+S +K+LVFDEADHML E GF+DDSLRIM+ I 
Sbjct: 213  KRPPITAQVVIGTPGTIKKWMSSRKLGVSCVKILVFDEADHMLGEDGFQDDSLRIMRDIE 272

Query: 361  KSNPDCQVLLFSATFNDAVKAFIEKIVKEIFVKDYNQMFVNKEELSLDSVKQYKVNCPDE 182
            +S+P CQVLLFSATF++ VK F+ ++     VKDYNQ+FV KEELSL+SVKQYK+ CPDE
Sbjct: 273  RSSPHCQVLLFSATFDENVKNFVSRV-----VKDYNQLFVKKEELSLESVKQYKLICPDE 327

Query: 181  LSKIMVIKDKIFELGQKLGQTIIFVRTRNSASILHKALVEYGYEVTTIQGALKQDDRDKI 2
            L+KI VIKD+IFEL  KLGQTIIFVRTRNSA +LHKALV+ GYEVTTIQGAL  + RDKI
Sbjct: 328  LTKIRVIKDRIFELADKLGQTIIFVRTRNSAGMLHKALVDLGYEVTTIQGALTTEIRDKI 387


>ref|XP_002326399.1| predicted protein [Populus trichocarpa] gi|222833592|gb|EEE72069.1|
            predicted protein [Populus trichocarpa]
          Length = 492

 Score =  498 bits (1283), Expect = e-138
 Identities = 250/364 (68%), Positives = 302/364 (82%), Gaps = 3/364 (0%)
 Frame = -2

Query: 1084 QVKRLWGDEVDDEPESPSTSEDK---ELKLDSLKIDETKKANEFLDDPEDSNIKAVTSGD 914
            + KRLW DEVDDE   PS +E+K   EL +D+L IDE  K N+FLD+PEDS I+AVT+GD
Sbjct: 22   ETKRLWSDEVDDEEVQPSATEEKAVLELNVDALAIDENTKVNKFLDEPEDSRIQAVTTGD 81

Query: 913  TPYTSAKRFEDLSLSPELLKGLYVEMKFERPSKIQAISLPMILTPPHKNLIAQAHNGSGK 734
            TPYTSA  FEDL+LSPELLKGLYVEMKF++PSKIQAISLPMI+TPP+K+LIAQAHNGSGK
Sbjct: 82   TPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIMTPPYKDLIAQAHNGSGK 141

Query: 733  TTCFVLGMLSRVDPTFAAPQALCICPTRELAIQNMEVLERMGKFTGITSELAIPTDSANY 554
            TTCFVLGMLSRVDP   +PQALCICPTREL+IQNMEVL++MGK+TGI+SE A+P +S N 
Sbjct: 142  TTCFVLGMLSRVDPKQQSPQALCICPTRELSIQNMEVLQKMGKYTGISSECAVPIESRNN 201

Query: 553  VPIQKRAPVNKQVVIGTPGTINKWITARKLGMSSMKVLVFDEADHMLAESGFKDDSLRIM 374
               + R P++ QVVIGTPGTI + ++ +KLG++ MKVLVFDEADHMLA+ GF+DDSLRIM
Sbjct: 202  DRSRYRPPISAQVVIGTPGTIKRLMSQKKLGVNDMKVLVFDEADHMLAKDGFQDDSLRIM 261

Query: 373  KAIVKSNPDCQVLLFSATFNDAVKAFIEKIVKEIFVKDYNQMFVNKEELSLDSVKQYKVN 194
            K I + N  CQVLLFSATF++ VK F+ K+     VKDYNQ+FV KE+LSL+S+KQYKV 
Sbjct: 262  KDIQRFNSHCQVLLFSATFDETVKNFVSKV-----VKDYNQLFVKKEDLSLESLKQYKVI 316

Query: 193  CPDELSKIMVIKDKIFELGQKLGQTIIFVRTRNSASILHKALVEYGYEVTTIQGALKQDD 14
             PDEL+KI V+KD+I ELG+ +GQ IIFV T+ SAS+LH +LVE GYEVTTI GAL  +D
Sbjct: 317  LPDELAKIRVVKDRILELGENIGQIIIFVNTKRSASMLHTSLVELGYEVTTIHGALNLED 376

Query: 13   RDKI 2
            RDKI
Sbjct: 377  RDKI 380


>ref|XP_004150128.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Cucumis
            sativus]
          Length = 508

 Score =  498 bits (1282), Expect = e-138
 Identities = 254/360 (70%), Positives = 297/360 (82%), Gaps = 1/360 (0%)
 Frame = -2

Query: 1078 KRLWGDEVDDEP-ESPSTSEDKELKLDSLKIDETKKANEFLDDPEDSNIKAVTSGDTPYT 902
            KR WGDE DD+  ES  +S      L+SLKI +       L++P DSNI AVT+GDTPY+
Sbjct: 37   KRAWGDEEDDDVVESGDSSSAPSEYLESLKIQDDTN----LEEPIDSNITAVTTGDTPYS 92

Query: 901  SAKRFEDLSLSPELLKGLYVEMKFERPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCF 722
            SA  FEDL+LS ELLKGLYVEMKF +PSKIQAISLPMILTPP+K+LIAQAHNGSGKTTCF
Sbjct: 93   SASTFEDLNLSKELLKGLYVEMKFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCF 152

Query: 721  VLGMLSRVDPTFAAPQALCICPTRELAIQNMEVLERMGKFTGITSELAIPTDSANYVPIQ 542
            VLGMLSRVD    APQA CICPTRELA+QN+EVL++MGK+TGITSE A+P DSANY+P+ 
Sbjct: 153  VLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYIPMS 212

Query: 541  KRAPVNKQVVIGTPGTINKWITARKLGMSSMKVLVFDEADHMLAESGFKDDSLRIMKAIV 362
            KR P+  QVVIGTPGTI KW++ RKLG+S +K+LVFDEADHML E GF+DDSLRIM+ I 
Sbjct: 213  KRPPITAQVVIGTPGTIKKWMSGRKLGVSCVKILVFDEADHMLGEDGFQDDSLRIMRDIE 272

Query: 361  KSNPDCQVLLFSATFNDAVKAFIEKIVKEIFVKDYNQMFVNKEELSLDSVKQYKVNCPDE 182
            +S+P CQVLLFSATF++ VK F+ ++     VKDYNQ+FV KEELSL+SVKQYK+ CPDE
Sbjct: 273  RSSPHCQVLLFSATFDENVKNFVSRV-----VKDYNQLFVKKEELSLESVKQYKLICPDE 327

Query: 181  LSKIMVIKDKIFELGQKLGQTIIFVRTRNSASILHKALVEYGYEVTTIQGALKQDDRDKI 2
            L+KI VIKD+IFEL  KLGQTIIFVRTRNSA +LHKALV+ GYEVTTIQGAL  + RDKI
Sbjct: 328  LTKIRVIKDRIFELADKLGQTIIFVRTRNSAGMLHKALVDLGYEVTTIQGALTTEIRDKI 387


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