BLASTX nr result

ID: Panax21_contig00008825 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008825
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603917.1| FAR1-related protein [Medicago truncatula] g...    66   3e-09
gb|ABN05718.1| FAR1; Zinc finger, SWIM-type [Medicago truncatula]      61   8e-08
ref|XP_003615833.1| FAR1-related protein [Medicago truncatula] g...    61   1e-07
ref|XP_003623531.1| FAR1-related protein [Medicago truncatula] g...    60   1e-07

>ref|XP_003603917.1| FAR1-related protein [Medicago truncatula]
           gi|355492965|gb|AES74168.1| FAR1-related protein
           [Medicago truncatula]
          Length = 308

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 7/154 (4%)
 Frame = -3

Query: 461 PNQYILRRWTKSAKCGRVMDDLGGSVSEICDTSVLLRRSSLFQIASNVIDEAALSEDNTK 282
           P+++I+ RWTK A    + D        I D +V    S L     N +          K
Sbjct: 161 PSKHIVNRWTKFANRTPIFD--------IAD-NVFEEDSKLISDVWNHLHSCVEKAGKDK 211

Query: 281 ELKELLLS---TQRKFAAMNHGSMDVERSINMPVSIESQHDISLKEPSSVRTKGCGKRLK 111
           E   L+L+      K      GS    R+ ++ +      ++ +  P   +TKG GKR+K
Sbjct: 212 ERLLLVLNGAVNMEKQLDEFEGSSKRTRTDDLILGSNIPDEVEILPPQFAKTKGSGKRIK 271

Query: 110 GGKEKAI----KKARKCNGCGIVGVSHDKRNCPK 21
           GGKEKAI    KKAR C  CG   V HD RNCP+
Sbjct: 272 GGKEKAIEQQQKKARLCKACGEY-VHHDSRNCPQ 304


>gb|ABN05718.1| FAR1; Zinc finger, SWIM-type [Medicago truncatula]
          Length = 800

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
 Frame = -3

Query: 461  PNQYILRRWTKSAKCGRVMDDLGGSVSEICDTSVLLRRSSLFQIASNVIDEA------AL 300
            P+ YI+ RWTK A    + D         CD +VL    S F+  S ++ +        +
Sbjct: 646  PSHYIVNRWTKLATSKPIFD---------CDGNVL-EACSKFESESTLVSKTWSQLLKCM 695

Query: 299  SEDNTKELKELLL-----STQRKFAAMNHGSM-----DVERSINMPVSIESQHDISLKEP 150
                T + K LL+     S + K + M    +     ++E  I   V+      I +  P
Sbjct: 696  HMAGTNKEKLLLIYDEGCSIELKMSKMKTDVVSRPLDELEAFIGSNVA----KTIEVLPP 751

Query: 149  SSVRTKGCGKRLKGGKEKAI----KKARKCNGCGIVGVSHDKRNCP 24
                TKGCGKR+KGGKEKA+    K+ R C  C     SHD RNCP
Sbjct: 752  EPSNTKGCGKRIKGGKEKAMEQQQKRTRLCKACKQY-ASHDSRNCP 796


>ref|XP_003615833.1| FAR1-related protein [Medicago truncatula]
           gi|355517168|gb|AES98791.1| FAR1-related protein
           [Medicago truncatula]
          Length = 662

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
 Frame = -3

Query: 461 PNQYILRRWTKSAKCGRVMDDLGGSVSEICDTSVLLRRSSLFQIASNVIDEAALSEDNTK 282
           P++YIL RWTK A    V D +G  V E         ++    I SNV D+     +   
Sbjct: 514 PSKYILNRWTKFANKKPVFD-IGDIVYE---------KAGQGGIVSNVWDKLFRCVEKAG 563

Query: 281 ELKELLLSTQRKFAAMN------HGSMDVERSINMPVSIESQ--HDISLKEPSSVRTKGC 126
           + KE LL        M        GS    ++ ++   I +     + +  P   +TKG 
Sbjct: 564 QDKEKLLIVLNGAVIMEKELDEFEGSSKQTKTNDLETYIRTNIPERVEILPPQFAKTKGS 623

Query: 125 GKRLKGGKEKAI----KKARKCNGCGIVGVSHDKRNCP 24
           GKR+K GKEKA+    K+ R C  CG     H+ RNCP
Sbjct: 624 GKRIKSGKEKAVEQQQKRTRLCKACGEY-AHHNSRNCP 660


>ref|XP_003623531.1| FAR1-related protein [Medicago truncatula]
           gi|355498546|gb|AES79749.1| FAR1-related protein
           [Medicago truncatula]
          Length = 645

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
 Frame = -3

Query: 461 PNQYILRRWTKSAKCGRVMDDLGGSVSEICDTSVLLRRSSLFQIASNVIDEAALSEDNTK 282
           P++YIL RWTK A    V D             ++  ++    + SNV D+     +   
Sbjct: 497 PSKYILNRWTKFANKKPVFDK----------GDIVYEKAGQGGLVSNVWDKLFRCVEKAG 546

Query: 281 ELKELLLSTQRKFAAMN------HGSMDVERSINMPVSIESQ--HDISLKEPSSVRTKGC 126
           + KE LL        M        GS    ++ ++   I +     + +  P   +TKG 
Sbjct: 547 QDKEKLLIVLNGAVIMEKELDEFEGSSKQTKTNDLETYIRTNISEKVEILPPQFAKTKGS 606

Query: 125 GKRLKGGKEKAI----KKARKCNGCGIVGVSHDKRNCP 24
           GKR+K GKEK +    K+ R C  CG     HD RNCP
Sbjct: 607 GKRIKSGKEKVVEQQQKRTRLCKACGEY-AHHDSRNCP 643


Top