BLASTX nr result

ID: Panax21_contig00008700 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008700
         (542 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277320.2| PREDICTED: uncharacterized protein LOC100251...   176   3e-42
emb|CBI30249.3| unnamed protein product [Vitis vinifera]              176   3e-42
ref|XP_002528590.1| conserved hypothetical protein [Ricinus comm...   142   3e-32
ref|XP_003553583.1| PREDICTED: uncharacterized protein LOC100811...   110   2e-22
ref|XP_003625749.1| Pre-mRNA cleavage complex 2 protein Pcf11 [M...   109   2e-22

>ref|XP_002277320.2| PREDICTED: uncharacterized protein LOC100251089 [Vitis vinifera]
          Length = 801

 Score =  176 bits (445), Expect = 3e-42
 Identities = 101/184 (54%), Positives = 124/184 (67%), Gaps = 5/184 (2%)
 Frame = +3

Query: 6   LNSGRQRADPRLKMHNIQRPPRDAVTESVQEK-GSAYGEYEYGTELSRHSGSGIGKTSDR 182
           +N+GR   D  L   +IQ   R+A+ E V++K G+ YG+YEYGT+LSR+ G GIG+ S  
Sbjct: 270 INAGRPWDD--LPAKSIQHSHREAIGELVEKKIGAPYGDYEYGTDLSRNPGLGIGRPS-- 325

Query: 183 VTEQGIDKAWYGAGS-ITEIVSSQRNGFDIKLGLPHYSAHRSANSDAMSQPTHNLVTSRN 359
             EQG DK WY AG  + E  SSQRNGFDIK G P+Y A RSAN+DA  QPT + V   N
Sbjct: 326 --EQGHDKPWYKAGGRVVETFSSQRNGFDIKHGFPNYPAPRSANADAHLQPTQSTVNRSN 383

Query: 360 SGEMDRSWKNSEEEEYMWDDLNSGSTIHGASHKSKRDPRLTDDSERL---NPLLKPQKLR 530
           SG M RSWKNSEEEEYMWDD+NS  T H A++ SK+D    DDSE+L   N L KPQ + 
Sbjct: 384 SG-MSRSWKNSEEEEYMWDDMNSKMTEHSAANHSKKDRWTPDDSEKLDFENQLQKPQSIY 442

Query: 531 EFGS 542
           + GS
Sbjct: 443 DVGS 446


>emb|CBI30249.3| unnamed protein product [Vitis vinifera]
          Length = 1049

 Score =  176 bits (445), Expect = 3e-42
 Identities = 101/184 (54%), Positives = 124/184 (67%), Gaps = 5/184 (2%)
 Frame = +3

Query: 6   LNSGRQRADPRLKMHNIQRPPRDAVTESVQEK-GSAYGEYEYGTELSRHSGSGIGKTSDR 182
           +N+GR   D  L   +IQ   R+A+ E V++K G+ YG+YEYGT+LSR+ G GIG+ S  
Sbjct: 349 INAGRPWDD--LPAKSIQHSHREAIGELVEKKIGAPYGDYEYGTDLSRNPGLGIGRPS-- 404

Query: 183 VTEQGIDKAWYGAGS-ITEIVSSQRNGFDIKLGLPHYSAHRSANSDAMSQPTHNLVTSRN 359
             EQG DK WY AG  + E  SSQRNGFDIK G P+Y A RSAN+DA  QPT + V   N
Sbjct: 405 --EQGHDKPWYKAGGRVVETFSSQRNGFDIKHGFPNYPAPRSANADAHLQPTQSTVNRSN 462

Query: 360 SGEMDRSWKNSEEEEYMWDDLNSGSTIHGASHKSKRDPRLTDDSERL---NPLLKPQKLR 530
           SG M RSWKNSEEEEYMWDD+NS  T H A++ SK+D    DDSE+L   N L KPQ + 
Sbjct: 463 SG-MSRSWKNSEEEEYMWDDMNSKMTEHSAANHSKKDRWTPDDSEKLDFENQLQKPQSIY 521

Query: 531 EFGS 542
           + GS
Sbjct: 522 DVGS 525


>ref|XP_002528590.1| conserved hypothetical protein [Ricinus communis]
           gi|223531986|gb|EEF33798.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1123

 Score =  142 bits (359), Expect = 3e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
 Frame = +3

Query: 3   NLNSGRQRADPRLKMHNIQRPPRDAVTESVQEK--GSAYGEYEYGTELSRHSGSGIGKTS 176
           ++ +GR   DP +KMHNIQ   R+ +++   EK  GS YG++EY +E+SR SG GIG+TS
Sbjct: 271 SIAAGRSWVDPPVKMHNIQHTQREILSDPGHEKKIGSTYGDFEYNSEISRISGLGIGRTS 330

Query: 177 DRVTEQGIDKAWYGAG-SITEIVSSQRNGFDIKLGLPHYSAHRSANSDAMSQPTHNLVTS 353
            RV  +G +K WYGAG S TE +S Q+NGF +K G P+YS  +  N D   Q T +   S
Sbjct: 331 GRVAAEGHEKPWYGAGNSATETISGQKNGFTVKHGFPNYSTSKPVNVDLHLQRTQS-NAS 389

Query: 354 RNSGEMDRSWKNSEEEEYMWDDLNSGSTIHGASH---KSKRDPRLTDDSERL---NPLLK 515
           +++  +  SWKNSEEEE+MW D++S  + H A++    S++D    D SE+L   N   K
Sbjct: 390 KSTTAVSASWKNSEEEEFMW-DMHSRLSDHDAANLSITSRKDRWTPDGSEKLEFENQFRK 448

Query: 516 PQKLRE 533
           PQ   E
Sbjct: 449 PQNALE 454


>ref|XP_003553583.1| PREDICTED: uncharacterized protein LOC100811629 [Glycine max]
          Length = 1028

 Score =  110 bits (274), Expect = 2e-22
 Identities = 71/185 (38%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
 Frame = +3

Query: 6   LNSGRQRADPRLKMHNIQRPPRDAVTESVQEK---GSAYGEYEYGTELSRHSGSGIGKTS 176
           L++ R   DPR+ M N Q   RD   +SV EK   GS+YG  EY + +S +  SG G+T 
Sbjct: 264 LSAARPWLDPRINMLNNQHTHRDVFNDSVPEKSMDGSSYGGSEYSSVISSNLVSGAGRTG 323

Query: 177 DRVTEQGIDKAWYGA-GSITEIVSSQRNGFDIKLGLPHYSAHRSANSDAMSQPTHNLVTS 353
            ++ + G DK W+   G   +  S QRNGF++K    +  A +  N DA  QP  +    
Sbjct: 324 SKLIDLGHDKTWFKTDGGDPDTTSGQRNGFNLKRSYSNREAPKLTNLDAHRQPRQSTTDI 383

Query: 354 RNSGEMDRSWKNSEEEEYMWDDLNSGSTIHGASHKS--KRDPRLTDDSERLNPLLKPQKL 527
           RN+  M  +WK SEEEE+MW ++N G T HGA+  S    D  + DD E L      Q  
Sbjct: 384 RNN-LMSGNWKTSEEEEFMWGEMNIGLTDHGANVSSNLSTDTWMADD-ENLEGEDHLQIT 441

Query: 528 REFGS 542
           R FG+
Sbjct: 442 RPFGA 446


>ref|XP_003625749.1| Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula]
           gi|355500764|gb|AES81967.1| Pre-mRNA cleavage complex 2
           protein Pcf11 [Medicago truncatula]
          Length = 1039

 Score =  109 bits (273), Expect = 2e-22
 Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
 Frame = +3

Query: 6   LNSGRQRADPRLKMHNIQRPPRDAVTESVQEK--GSAYGEYEYGTELSRHSGSGIGKTSD 179
           L + R   DPRL MHN Q   R A+ +SV EK  G AYG+ EY + +S   GSG+G+T  
Sbjct: 283 LGAARPWLDPRLNMHNNQHTHRGALNDSVPEKSIGGAYGDDEYNSSVSNSLGSGVGRTGS 342

Query: 180 RVTEQGIDKAWYGAGSITEIVSSQRNGFDIKLGLPHYSAHRSANSDAMSQPTHNLVTSRN 359
           R+            G + E +S QRNGF +K    ++ A +S N DA     HN+     
Sbjct: 343 RLI-----------GGVAETLSGQRNGFSLKHSFSNHEAPKSVNLDA-----HNI----R 382

Query: 360 SGEMDRSWKNSEEEEYMWDDLNSG--STIHGASHKSKRDPRLTDD 488
           S  M ++WKNSEEEE+MWD++N G    +   S+    D  + DD
Sbjct: 383 SSAMSKNWKNSEEEEFMWDEVNPGLSDNVPNVSNNLSSDQWMADD 427


Top