BLASTX nr result

ID: Panax21_contig00008683 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008683
         (614 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putativ...   102   7e-20
ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    95   1e-17
ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    94   2e-17
ref|XP_002279543.2| PREDICTED: uncharacterized protein LOC100253...    87   3e-15

>ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223527420|gb|EEF29559.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 469

 Score =  102 bits (253), Expect = 7e-20
 Identities = 47/65 (72%), Positives = 54/65 (83%)
 Frame = +1

Query: 310 KTICEPNFKPIYLITLLQTLHGEKCIVFTSSVESTHRLCALLKFFGDLQIKFKEYSGVQR 489
           + ICEP  KP+YL+ LLQ L GEKCIVF SSVESTHRLC LLKFFGDL++K KEYSG+Q 
Sbjct: 288 RVICEPKLKPLYLVALLQNLVGEKCIVFASSVESTHRLCTLLKFFGDLKVKIKEYSGLQH 347

Query: 490 *AVRS 504
            +VRS
Sbjct: 348 QSVRS 352


>ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|222848405|gb|EEE85952.1|
           predicted protein [Populus trichocarpa]
          Length = 518

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 46/65 (70%), Positives = 53/65 (81%)
 Frame = +1

Query: 310 KTICEPNFKPIYLITLLQTLHGEKCIVFTSSVESTHRLCALLKFFGDLQIKFKEYSGVQR 489
           K IC    KP+YL+ +LQ L GEKCIVFTSSVESTHRLC LL FFGDL++K KEYSG+QR
Sbjct: 315 KLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFGDLKVKIKEYSGLQR 374

Query: 490 *AVRS 504
            +VRS
Sbjct: 375 QSVRS 379


>ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
           gi|297740757|emb|CBI30939.3| unnamed protein product
           [Vitis vinifera]
          Length = 516

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 46/65 (70%), Positives = 50/65 (76%)
 Frame = +1

Query: 310 KTICEPNFKPIYLITLLQTLHGEKCIVFTSSVESTHRLCALLKFFGDLQIKFKEYSGVQR 489
           K ICE   KP+YL+ LL+ L GEKCIVFTSSVES HRLC LL FFGDLQIK  EYSG+Q 
Sbjct: 312 KLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQIKIGEYSGLQH 371

Query: 490 *AVRS 504
             VRS
Sbjct: 372 QRVRS 376


>ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
           sativus] gi|449490565|ref|XP_004158642.1| PREDICTED:
           DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
           sativus]
          Length = 517

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +1

Query: 316 ICEPNFKPIYLITLLQTLHGEKCIVFTSSVESTHRLCALLKFFGDLQIKFKEYSGVQR*A 495
           ICE   KP+YL+ LLQ+L  EKCIVFTSSVESTHRLC+LL FF DL++K KEYSG+QR +
Sbjct: 314 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELKIKEYSGLQRQS 373

Query: 496 VRS 504
           +RS
Sbjct: 374 LRS 376


>ref|XP_002279543.2| PREDICTED: uncharacterized protein LOC100253124 [Vitis vinifera]
          Length = 647

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 41/66 (62%), Positives = 48/66 (72%)
 Frame = +1

Query: 106 NYPSSFTAQEPPIKAADRLSNPLVNDDWRVYVCLEKNLIAFESNGTIAWKLPLGYTCDVS 285
           N  SS +AQ P  K A RLSNPL+  D RVY C E+NL AFE NG+I+W +PL YTC+V 
Sbjct: 4   NTVSSVSAQGPSQKTACRLSNPLIGYDGRVYTCSERNLFAFERNGSISWTVPLNYTCNVG 63

Query: 286 IAPVHG 303
           IAPVHG
Sbjct: 64  IAPVHG 69


Top