BLASTX nr result

ID: Panax21_contig00007485 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00007485
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-lik...   206   2e-51
emb|CBI18988.3| unnamed protein product [Vitis vinifera]              206   2e-51
ref|XP_002306648.1| chromatin remodeling complex subunit [Populu...   201   7e-50
ref|XP_002520335.1| DNA binding protein, putative [Ricinus commu...   191   7e-47
ref|XP_003522572.1| PREDICTED: SWI/SNF complex subunit SWI3C-lik...   183   1e-44

>ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-like [Vitis vinifera]
          Length = 771

 Score =  206 bits (523), Expect = 2e-51
 Identities = 97/146 (66%), Positives = 119/146 (81%), Gaps = 1/146 (0%)
 Frame = -1

Query: 435 SVNHTPEIYMECRNRIVAKYMENPEKRLTVSDCNGLAVGVEIDDMTRILRFLDHWGIINY 256
           S +HT E+YMECRN IVAKYME+PEKRL+VSDC GL  G++ +D+TRI+RFLDHWGIINY
Sbjct: 208 SPDHTAELYMECRNLIVAKYMEDPEKRLSVSDCKGLVAGIQEEDLTRIVRFLDHWGIINY 267

Query: 255 CAAAL-NRELQNDGSCFSEDSNGELRVPMTLLKSIDSLIQFDRPKCRLSAADVYPELGFR 79
           CA+++ NRE  +  S   EDSNGE+ VP   LKSIDSLI+FD+PKCRL AA+VY  L   
Sbjct: 268 CASSVPNREPWSSTSYLREDSNGEVHVPSAALKSIDSLIKFDKPKCRLKAAEVYSSLSCN 327

Query: 78  GREESDLDSRIRERLSENQCNYCARP 1
           G E+SDLD +IRERLS+N+CNYC+RP
Sbjct: 328 GDEDSDLDCKIRERLSDNRCNYCSRP 353


>emb|CBI18988.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  206 bits (523), Expect = 2e-51
 Identities = 97/146 (66%), Positives = 119/146 (81%), Gaps = 1/146 (0%)
 Frame = -1

Query: 435 SVNHTPEIYMECRNRIVAKYMENPEKRLTVSDCNGLAVGVEIDDMTRILRFLDHWGIINY 256
           S +HT E+YMECRN IVAKYME+PEKRL+VSDC GL  G++ +D+TRI+RFLDHWGIINY
Sbjct: 90  SPDHTAELYMECRNLIVAKYMEDPEKRLSVSDCKGLVAGIQEEDLTRIVRFLDHWGIINY 149

Query: 255 CAAAL-NRELQNDGSCFSEDSNGELRVPMTLLKSIDSLIQFDRPKCRLSAADVYPELGFR 79
           CA+++ NRE  +  S   EDSNGE+ VP   LKSIDSLI+FD+PKCRL AA+VY  L   
Sbjct: 150 CASSVPNREPWSSTSYLREDSNGEVHVPSAALKSIDSLIKFDKPKCRLKAAEVYSSLSCN 209

Query: 78  GREESDLDSRIRERLSENQCNYCARP 1
           G E+SDLD +IRERLS+N+CNYC+RP
Sbjct: 210 GDEDSDLDCKIRERLSDNRCNYCSRP 235


>ref|XP_002306648.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222856097|gb|EEE93644.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 796

 Score =  201 bits (510), Expect = 7e-50
 Identities = 97/144 (67%), Positives = 110/144 (76%)
 Frame = -1

Query: 435 SVNHTPEIYMECRNRIVAKYMENPEKRLTVSDCNGLAVGVEIDDMTRILRFLDHWGIINY 256
           S +HTPE Y ECRNRIVAKYMENPEKRLTV DC GL VG++ +D TRI RFLDHWGIINY
Sbjct: 221 SPDHTPEKYRECRNRIVAKYMENPEKRLTVPDCQGLVVGIDNEDFTRIFRFLDHWGIINY 280

Query: 255 CAAALNRELQNDGSCFSEDSNGELRVPMTLLKSIDSLIQFDRPKCRLSAADVYPELGFRG 76
           CAA  + E  N GS   ED NGE+ VP   LKS DSLIQFD+PKCRL AADVY  L    
Sbjct: 281 CAAPPSCEYWNGGSYLREDPNGEVHVPSAALKSFDSLIQFDKPKCRLKAADVYSSLSCHD 340

Query: 75  REESDLDSRIRERLSENQCNYCAR 4
            + SDLD+RIRE LSEN+CN+C++
Sbjct: 341 DDLSDLDNRIRECLSENRCNHCSQ 364


>ref|XP_002520335.1| DNA binding protein, putative [Ricinus communis]
           gi|223540554|gb|EEF42121.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 771

 Score =  191 bits (484), Expect = 7e-47
 Identities = 91/144 (63%), Positives = 110/144 (76%)
 Frame = -1

Query: 435 SVNHTPEIYMECRNRIVAKYMENPEKRLTVSDCNGLAVGVEIDDMTRILRFLDHWGIINY 256
           S +HTPE YMECRN IVAKYM NPE+R+ VSDC G  VG+E +D+TRI+RFLD WGIINY
Sbjct: 222 SPDHTPEKYMECRNYIVAKYMGNPERRIAVSDCQGFVVGIENEDLTRIVRFLDQWGIINY 281

Query: 255 CAAALNRELQNDGSCFSEDSNGELRVPMTLLKSIDSLIQFDRPKCRLSAADVYPELGFRG 76
           CAA  +RE  + GS   ED NGE+ VP   LKSIDSLI+FD+P+C L AA++Y  L +  
Sbjct: 282 CAAPSSRESWSGGSYLREDPNGEVHVPSAALKSIDSLIKFDKPRCSLKAAEIYSSLSYHD 341

Query: 75  REESDLDSRIRERLSENQCNYCAR 4
            + SDLDSRIRERLSEN C YC++
Sbjct: 342 -DFSDLDSRIRERLSENHCTYCSQ 364


>ref|XP_003522572.1| PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max]
          Length = 785

 Score =  183 bits (465), Expect = 1e-44
 Identities = 85/145 (58%), Positives = 106/145 (73%)
 Frame = -1

Query: 435 SVNHTPEIYMECRNRIVAKYMENPEKRLTVSDCNGLAVGVEIDDMTRILRFLDHWGIINY 256
           S +HTPE YMECRN IVA +ME+P KR+TVSDC GL  GV ++D+TRI+RFLDHWGIINY
Sbjct: 202 SPDHTPEKYMECRNCIVALHMEDPGKRITVSDCKGLLAGVNVEDLTRIVRFLDHWGIINY 261

Query: 255 CAAALNRELQNDGSCFSEDSNGELRVPMTLLKSIDSLIQFDRPKCRLSAADVYPELGFRG 76
           C    + E  N  SC  E+++GE+RVP   LKSIDSLI+FD+P C+L A ++Y  L    
Sbjct: 262 CVRMPSHESPNAVSCLREETSGEVRVPSEALKSIDSLIKFDKPNCKLKADEIYSSLSAHS 321

Query: 75  REESDLDSRIRERLSENQCNYCARP 1
            +  DL+ RIRE LSEN CNYC+ P
Sbjct: 322 ADVLDLEDRIREHLSENHCNYCSCP 346


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