BLASTX nr result

ID: Panax21_contig00007472 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00007472
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281541.2| PREDICTED: THO complex subunit 2-like [Vitis...    74   3e-23
emb|CBI26799.3| unnamed protein product [Vitis vinifera]               74   3e-23
ref|XP_002328963.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-22
ref|XP_004142861.1| PREDICTED: THO complex subunit 2-like [Cucum...    74   4e-22
ref|XP_003530933.1| PREDICTED: uncharacterized protein C1D4.14-l...    75   6e-22

>ref|XP_002281541.2| PREDICTED: THO complex subunit 2-like [Vitis vinifera]
          Length = 1849

 Score = 73.6 bits (179), Expect(2) = 3e-23
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = -3

Query: 429 VVINADGPHIKMVSEQFDRCHGALPQYVEFLSSAVTPTSAYPLLSP 292
           V+INAD P+IKMVSEQFDRCHG L QYVEFL SAVTP +AY  L P
Sbjct: 785 VLINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPATAYAQLIP 830



 Score = 59.7 bits (143), Expect(2) = 3e-23
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = -1

Query: 533 ALIKSTNRLRDSLLPKE*PKLAVPLLLLIA*HRFVL 426
           ALIKSTNRLRDSLLPKE PKLA+PLLLLIA HR V+
Sbjct: 750 ALIKSTNRLRDSLLPKEEPKLAIPLLLLIAQHRSVV 785


>emb|CBI26799.3| unnamed protein product [Vitis vinifera]
          Length = 1767

 Score = 73.6 bits (179), Expect(2) = 3e-23
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = -3

Query: 429 VVINADGPHIKMVSEQFDRCHGALPQYVEFLSSAVTPTSAYPLLSP 292
           V+INAD P+IKMVSEQFDRCHG L QYVEFL SAVTP +AY  L P
Sbjct: 785 VLINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPATAYAQLIP 830



 Score = 59.7 bits (143), Expect(2) = 3e-23
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = -1

Query: 533 ALIKSTNRLRDSLLPKE*PKLAVPLLLLIA*HRFVL 426
           ALIKSTNRLRDSLLPKE PKLA+PLLLLIA HR V+
Sbjct: 750 ALIKSTNRLRDSLLPKEEPKLAIPLLLLIAQHRSVV 785


>ref|XP_002328963.1| predicted protein [Populus trichocarpa] gi|222839197|gb|EEE77548.1|
           predicted protein [Populus trichocarpa]
          Length = 1805

 Score = 73.9 bits (180), Expect(2) = 2e-22
 Identities = 36/46 (78%), Positives = 37/46 (80%)
 Frame = -3

Query: 429 VVINADGPHIKMVSEQFDRCHGALPQYVEFLSSAVTPTSAYPLLSP 292
           VVINAD P+IKMVSEQFDRCHG L QYVEFL  AVTP SAY  L P
Sbjct: 788 VVINADAPYIKMVSEQFDRCHGTLLQYVEFLCGAVTPPSAYAQLIP 833



 Score = 57.0 bits (136), Expect(2) = 2e-22
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -1

Query: 533 ALIKSTNRLRDSLLPKE*PKLAVPLLLLIA*HRFVL 426
           AL KSTNRLRDSLLPK+ PKLA+PLLLLIA HR V+
Sbjct: 753 ALFKSTNRLRDSLLPKDEPKLAIPLLLLIAQHRSVV 788


>ref|XP_004142861.1| PREDICTED: THO complex subunit 2-like [Cucumis sativus]
           gi|449506883|ref|XP_004162874.1| PREDICTED: THO complex
           subunit 2-like [Cucumis sativus]
          Length = 1887

 Score = 73.6 bits (179), Expect(2) = 4e-22
 Identities = 35/46 (76%), Positives = 39/46 (84%)
 Frame = -3

Query: 429 VVINADGPHIKMVSEQFDRCHGALPQYVEFLSSAVTPTSAYPLLSP 292
           VVINA+ P+IKMVSEQFDRCHG L QYVEFL++AVTP SAY  L P
Sbjct: 787 VVINANAPYIKMVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIP 832



 Score = 56.2 bits (134), Expect(2) = 4e-22
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = -1

Query: 533 ALIKSTNRLRDSLLPKE*PKLAVPLLLLIA*HR 435
           ALIKS+NRLRDSLLPK+ PKLAVPLLLLIA HR
Sbjct: 752 ALIKSSNRLRDSLLPKDEPKLAVPLLLLIAQHR 784


>ref|XP_003530933.1| PREDICTED: uncharacterized protein C1D4.14-like [Glycine max]
          Length = 1728

 Score = 74.7 bits (182), Expect(2) = 6e-22
 Identities = 36/46 (78%), Positives = 38/46 (82%)
 Frame = -3

Query: 429 VVINADGPHIKMVSEQFDRCHGALPQYVEFLSSAVTPTSAYPLLSP 292
           VVINAD P+IKMVSEQFDRCHG L QYVEFL SAVTP S Y +L P
Sbjct: 692 VVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYGILIP 737



 Score = 54.3 bits (129), Expect(2) = 6e-22
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -1

Query: 533 ALIKSTNRLRDSLLPKE*PKLAVPLLLLIA*HR 435
           ALIKST+RLRD+LLPK+ PKLA+PLLLLIA HR
Sbjct: 657 ALIKSTSRLRDALLPKDEPKLAIPLLLLIAQHR 689


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