BLASTX nr result

ID: Panax21_contig00007381 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00007381
         (669 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514651.1| replication factor A 1, rfa1, putative [Rici...   295   7e-78
ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|2...   283   3e-74
emb|CBI15109.3| unnamed protein product [Vitis vinifera]              280   2e-73
ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-...   280   2e-73
ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arab...   278   7e-73

>ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
           gi|223546255|gb|EEF47757.1| replication factor A 1,
           rfa1, putative [Ricinus communis]
          Length = 622

 Score =  295 bits (754), Expect = 7e-78
 Identities = 150/199 (75%), Positives = 169/199 (84%)
 Frame = -3

Query: 667 TMFNEAAKKFYDRFQLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSVAKEASEEATF 488
           TMFNEAA+KFYD+FQLGKVYYISKG+LKVANKQF+TVQNDYEM LNENS  +EAS+EA F
Sbjct: 229 TMFNEAARKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEEASDEAAF 288

Query: 487 IPETKFSFVPID*LGPYVNRNELVDVIGVVQSVSPSMSIRRKSNNETVPKRDITIADETK 308
           IPETKF+FVPID LGPYV+ NELVDVIGVVQSVSP+MSIRRKSNN+ VPKRDITIADETK
Sbjct: 289 IPETKFNFVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADETK 348

Query: 307 KNVVVSLWNELTTNVGQELLDIADQSPVVAIKSLKVGDFQGXXXXXXXXXXXXINPETPE 128
           K VVVSLWN+L T+VGQELLD+AD+SPVVAIK+LKVGDFQG            +NP+TPE
Sbjct: 349 KTVVVSLWNDLATDVGQELLDMADKSPVVAIKALKVGDFQGVSLSTLGRSIIQVNPDTPE 408

Query: 127 SKKLKSCIHTYSAHTTWRS 71
           SKKLKS   +    T+  S
Sbjct: 409 SKKLKSWFDSEGKETSLAS 427


>ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|222838845|gb|EEE77196.1|
           predicted protein [Populus trichocarpa]
          Length = 603

 Score =  283 bits (723), Expect = 3e-74
 Identities = 146/199 (73%), Positives = 162/199 (81%)
 Frame = -3

Query: 667 TMFNEAAKKFYDRFQLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSVAKEASEEATF 488
           TMFNEAAKKFYDRF+LGKVYYISKGTL+VANKQFKTVQNDYEMTLNENS  +EAS+EA  
Sbjct: 210 TMFNEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAAC 269

Query: 487 IPETKFSFVPID*LGPYVNRNELVDVIGVVQSVSPSMSIRRKSNNETVPKRDITIADETK 308
           IPETKF FVPID LGPYVN  +LVDVIG+VQSVSP+ SIRRKSNNETVPKRDI +ADETK
Sbjct: 270 IPETKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETK 329

Query: 307 KNVVVSLWNELTTNVGQELLDIADQSPVVAIKSLKVGDFQGXXXXXXXXXXXXINPETPE 128
           K VVVSLWNEL T+VGQEL DIAD+SPVVAIKSLKVGDFQG            +NP   E
Sbjct: 330 KTVVVSLWNELATSVGQELHDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAE 389

Query: 127 SKKLKSCIHTYSAHTTWRS 71
           S+KL++   +    T+  S
Sbjct: 390 SEKLRNWYDSEGKETSMAS 408


>emb|CBI15109.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  280 bits (716), Expect = 2e-73
 Identities = 143/186 (76%), Positives = 157/186 (84%)
 Frame = -3

Query: 667 TMFNEAAKKFYDRFQLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSVAKEASEEATF 488
           TMFNEAA+KFY++FQLGKVYYISKG LKVANKQFKTVQNDYEMTLNENS  +EAS E TF
Sbjct: 208 TMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETF 267

Query: 487 IPETKFSFVPID*LGPYVNRNELVDVIGVVQSVSPSMSIRRKSNNETVPKRDITIADETK 308
           IPE KF FV I+ LGPYVN  ELVDVIGVVQSVSP+MSIRRKSNN+ VPKRDITIAD+TK
Sbjct: 268 IPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTK 327

Query: 307 KNVVVSLWNELTTNVGQELLDIADQSPVVAIKSLKVGDFQGXXXXXXXXXXXXINPETPE 128
           K VVVSLWN+  TNVGQELLD AD+ P+VAIKSLKVGDFQG            +NP+TPE
Sbjct: 328 KTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPE 387

Query: 127 SKKLKS 110
           SKKL+S
Sbjct: 388 SKKLRS 393


>ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
           1 [Vitis vinifera]
          Length = 625

 Score =  280 bits (716), Expect = 2e-73
 Identities = 143/186 (76%), Positives = 157/186 (84%)
 Frame = -3

Query: 667 TMFNEAAKKFYDRFQLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSVAKEASEEATF 488
           TMFNEAA+KFY++FQLGKVYYISKG LKVANKQFKTVQNDYEMTLNENS  +EAS E TF
Sbjct: 231 TMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETF 290

Query: 487 IPETKFSFVPID*LGPYVNRNELVDVIGVVQSVSPSMSIRRKSNNETVPKRDITIADETK 308
           IPE KF FV I+ LGPYVN  ELVDVIGVVQSVSP+MSIRRKSNN+ VPKRDITIAD+TK
Sbjct: 291 IPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTK 350

Query: 307 KNVVVSLWNELTTNVGQELLDIADQSPVVAIKSLKVGDFQGXXXXXXXXXXXXINPETPE 128
           K VVVSLWN+  TNVGQELLD AD+ P+VAIKSLKVGDFQG            +NP+TPE
Sbjct: 351 KTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPE 410

Query: 127 SKKLKS 110
           SKKL+S
Sbjct: 411 SKKLRS 416


>ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
           lyrata] gi|297312244|gb|EFH42668.1| hypothetical protein
           ARALYDRAFT_496254 [Arabidopsis lyrata subsp. lyrata]
          Length = 631

 Score =  278 bits (711), Expect = 7e-73
 Identities = 138/186 (74%), Positives = 162/186 (87%)
 Frame = -3

Query: 667 TMFNEAAKKFYDRFQLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSVAKEASEEATF 488
           TMFN+AA+KFYDRFQLGKVYYIS+G+LK+ANKQFKTVQNDYEMTLNENS  +EAS E  F
Sbjct: 236 TMFNDAARKFYDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMF 295

Query: 487 IPETKFSFVPID*LGPYVNRNELVDVIGVVQSVSPSMSIRRKSNNETVPKRDITIADETK 308
           IPETKF+FVPI+ LG YVN+ EL+D+IGVVQSVSP+MSIRR+++NE +PKRDIT+ADE+K
Sbjct: 296 IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESK 355

Query: 307 KNVVVSLWNELTTNVGQELLDIADQSPVVAIKSLKVGDFQGXXXXXXXXXXXXINPETPE 128
           K VVVSLWN+L T +GQELLD+AD+SPVVAIKSLKVGDFQG            INPE+PE
Sbjct: 356 KTVVVSLWNDLATGIGQELLDMADKSPVVAIKSLKVGDFQGVSLSTISRSNVVINPESPE 415

Query: 127 SKKLKS 110
           +KKLKS
Sbjct: 416 AKKLKS 421


Top