BLASTX nr result
ID: Panax21_contig00007320
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00007320
(688 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 95 5e-38
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 92 2e-36
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 94 3e-36
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 92 8e-36
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 92 1e-35
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 95.1 bits (235), Expect(2) = 5e-38
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMP 541
R+K G DSIFVVVDRFSKMAHFIPCHKTDDASH+ADLFFREIVRLH +P
Sbjct: 1277 RTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVP 1325
Score = 89.0 bits (219), Expect(2) = 5e-38
Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Frame = -3
Query: 533 IFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNKTVFFVKSYH*KEYQIL 354
I S+RDTKFLS+F +TL KLGTKLLFS T +PQTDGQTE+VN+T+ + +L
Sbjct: 1328 IVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLR------AVL 1381
Query: 353 GRLFTSC*VCL*PICSFCY*FFSLKLYMVLIL*HRWIYHHYL-----------FLNILTW 207
+ CL P F Y + L+ + I + L L +
Sbjct: 1382 KKNIKMWEECL-PHIEFAY---NRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNF 1437
Query: 206 MERKKADFIR*IHEKARLNIERRTKQYIKQSNKG*HQVIFESGDWVWLHIRKRDF 42
+++A+ + +HE + NIER +Y +KG ++ FE GD VWLH+RK F
Sbjct: 1438 DAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERF 1492
Score = 52.4 bits (124), Expect(3) = 5e-17
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMPK 538
+++ G+DSI+VVVDR +K+A FIP T + +A+L+F IV LH +PK
Sbjct: 2099 KTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPK 2148
Score = 51.2 bits (121), Expect(3) = 5e-17
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = -3
Query: 539 KIIFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNK 402
K I S+R+++F S+F K L +LGT+L FS Y+PQTDGQTE +N+
Sbjct: 2148 KKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQ 2193
Score = 29.6 bits (65), Expect(3) = 5e-17
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 391 LLKAIIKKNIKFWEDCLPHVEFAYNRSVHSATNFSP 284
+L A + K W+ LP+ EF+YN S ++ +P
Sbjct: 2198 MLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAP 2233
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 92.0 bits (227), Expect(2) = 2e-36
Identities = 40/49 (81%), Positives = 46/49 (93%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMP 541
R++ G DS+FVVVDRFSKMAHFIPCHKTDDA+H+ADLFFREIVRLH +P
Sbjct: 1280 RTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVP 1328
Score = 87.0 bits (214), Expect(2) = 2e-36
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Frame = -3
Query: 533 IFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNKTVFFVKSYH*KEYQIL 354
I S+RD KFLS+F +TL KLGTKLLFS T +PQTDGQTE+VN+T+ + +L
Sbjct: 1331 IVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLR------AVL 1384
Query: 353 GRLFTSC*VCL*PICSFCY*FFSLKLYMVLIL*HRWIYHHYL-----------FLNILTW 207
+ CL P F Y + L+ + I + L L +
Sbjct: 1385 KKNIKMWEDCL-PHIEFAY---NRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNF 1440
Query: 206 MERKKADFIR*IHEKARLNIERRTKQYIKQSNKG*HQVIFESGDWVWLHIRKRDF 42
++A+ + +HE + NIER +Y S+KG ++ FE GD VWLH+RK F
Sbjct: 1441 DATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERF 1495
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 93.6 bits (231), Expect(2) = 3e-36
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMP 541
R+K G DSIFVVVDRFSKM HFIPCHKTDDASH+ADLFFREIVRLH +P
Sbjct: 1256 RTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVP 1304
Score = 84.3 bits (207), Expect(2) = 3e-36
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Frame = -3
Query: 533 IFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNKTVFFVKSYH*KE---- 366
I S+RDTKFLS+F +TL KLGTKLLFS T +PQTDGQ E+VN+T+ + K+
Sbjct: 1307 IVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKM 1366
Query: 365 -YQILGRLFTSC*VCL*PICSFCY*FFSLKLYMVLIL*HRWIYHHYLFLNILTWMERKKA 189
+ L + +C L C ++ L+ L + +++A
Sbjct: 1367 WEECLPHIEFACNRSLHSTTKMC----PFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRA 1422
Query: 188 DFIR*IHEKARLNIERRTKQYIKQSNKG*HQVIFESGDWVWLHIRKRDF 42
+ + +HE + NIER +Y +KG ++ FE GD VWLH+RK F
Sbjct: 1423 ELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERF 1471
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 92.4 bits (228), Expect(2) = 8e-36
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMP 541
R+K G DSIFVVVDRFSKMAHFIPCHK+DDA+HVADLFFREIVRLH +P
Sbjct: 1305 RTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1353
Score = 84.3 bits (207), Expect(2) = 8e-36
Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Frame = -3
Query: 533 IFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNKTVFFVKSYH*KEYQIL 354
I S+RDTKFLS+F +TL KLGTKLLFS T +PQTDGQTE+VN+T+ + +L
Sbjct: 1356 IVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLR------AVL 1409
Query: 353 GRLFTSC*VCL*PICSFCY--*FFSLKLYMVLIL*HRWIYHHYLFLNILTWMER------ 198
+ CL P F Y S + + + + L L ER
Sbjct: 1410 KKNIKMWEECL-PHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAK 1468
Query: 197 KKADFIR*IHEKARLNIERRTKQYIKQSNKG*HQVIFESGDWVWLHIRKRDF 42
+A+ + +HE + NIER +Y +KG V FE GD VWLH+RK F
Sbjct: 1469 YRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRF 1520
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 92.4 bits (228), Expect(2) = 1e-35
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2
Query: 687 RSKHGHDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHDMP 541
R+K G DSIFVVVDRFSKMAHFIPCHK+DDA+HVADLFFREIVRLH +P
Sbjct: 1305 RTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1353
Score = 83.6 bits (205), Expect(2) = 1e-35
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Frame = -3
Query: 533 IFSNRDTKFLSYF*KTLCYKLGTKLLFSITYYPQTDGQTEIVNKTVFFVKSYH*KEYQIL 354
I S+RDTKFLS+F +TL KLGTKLLFS T +PQTDGQTE+VN+T+ + +L
Sbjct: 1356 IVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLR------AVL 1409
Query: 353 GRLFTSC*VCL*PICSFCY--*FFSLKLYMVLIL*HRWIYHHYLFLNILTWMERKK---- 192
+ CL P F Y S + + + + L L ER
Sbjct: 1410 KKNIKMWEECL-PHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAK 1468
Query: 191 --ADFIR*IHEKARLNIERRTKQYIKQSNKG*HQVIFESGDWVWLHIRKRDF 42
A+ + +HE + NIER +Y +KG V FE GD VWLH+RK F
Sbjct: 1469 YHAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRF 1520