BLASTX nr result

ID: Panax21_contig00007305 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00007305
         (748 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia es...   266   4e-69
ref|XP_002285101.1| PREDICTED: 40S ribosomal protein S16 [Vitis ...   263   2e-68
ref|XP_002281350.1| PREDICTED: 40S ribosomal protein S16 [Vitis ...   263   4e-68
gb|ABK20993.1| unknown [Picea sitchensis] gi|116781861|gb|ABK222...   262   5e-68
ref|XP_002314714.1| predicted protein [Populus trichocarpa] gi|1...   262   6e-68

>gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia esula]
          Length = 144

 Score =  266 bits (679), Expect = 4e-69
 Identities = 129/143 (90%), Positives = 137/143 (95%)
 Frame = +1

Query: 133 ATPKDSVQCFGRKKTTVAVTHCKTGRGLIKINGVPIELIQPEILRYKAFEPILLLGHHRF 312
           ATP +SVQCFGRKKT VAVTHCK GRGLIKING PIEL++PEILR+KA+EPILLLG HRF
Sbjct: 2   ATPTESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRF 61

Query: 313 AGVDMRIRVKGGGHTSQIYAIRQSISKALVAYYQKYVGEQAKKEIKDILVRYDRTLLVAD 492
           AGVDMRIRVKGGGHTSQIYAIRQSI+KALVAYYQK+V EQ+KKEIKDILVRYDRTLLVAD
Sbjct: 62  AGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVAD 121

Query: 493 PRRCEPKKFGGRGARARFQKSYR 561
           PRRCEPKKFGGRGARARFQKSYR
Sbjct: 122 PRRCEPKKFGGRGARARFQKSYR 144


>ref|XP_002285101.1| PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]
           gi|147826473|emb|CAN72805.1| hypothetical protein
           VITISV_035308 [Vitis vinifera]
          Length = 144

 Score =  263 bits (673), Expect = 2e-68
 Identities = 129/144 (89%), Positives = 137/144 (95%)
 Frame = +1

Query: 130 MATPKDSVQCFGRKKTTVAVTHCKTGRGLIKINGVPIELIQPEILRYKAFEPILLLGHHR 309
           MA+P +SVQCFGRKKT VAVT+CK GRGLIKING PIEL++PEILRYKA EPILLLG HR
Sbjct: 1   MASPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAVEPILLLGRHR 60

Query: 310 FAGVDMRIRVKGGGHTSQIYAIRQSISKALVAYYQKYVGEQAKKEIKDILVRYDRTLLVA 489
           FAGVDMRIRVKGGGHTSQIYAIRQSI+KALVA+YQKYV EQ+KKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 490 DPRRCEPKKFGGRGARARFQKSYR 561
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144


>ref|XP_002281350.1| PREDICTED: 40S ribosomal protein S16 [Vitis vinifera]
           gi|147790060|emb|CAN75982.1| hypothetical protein
           VITISV_012186 [Vitis vinifera]
          Length = 144

 Score =  263 bits (671), Expect = 4e-68
 Identities = 129/144 (89%), Positives = 137/144 (95%)
 Frame = +1

Query: 130 MATPKDSVQCFGRKKTTVAVTHCKTGRGLIKINGVPIELIQPEILRYKAFEPILLLGHHR 309
           MA P +SVQCFGRKKT VAVT+CK GRGLIKING PIELI+PEILR+KA+EPILLLG HR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRHKAYEPILLLGRHR 60

Query: 310 FAGVDMRIRVKGGGHTSQIYAIRQSISKALVAYYQKYVGEQAKKEIKDILVRYDRTLLVA 489
           FAGVDMRIRVKGGGHTSQIYAIRQSI+KALVA+YQKYV EQ+KKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 490 DPRRCEPKKFGGRGARARFQKSYR 561
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144


>gb|ABK20993.1| unknown [Picea sitchensis] gi|116781861|gb|ABK22272.1| unknown
           [Picea sitchensis] gi|224285075|gb|ACN40265.1| unknown
           [Picea sitchensis]
          Length = 143

 Score =  262 bits (670), Expect = 5e-68
 Identities = 129/139 (92%), Positives = 134/139 (96%)
 Frame = +1

Query: 145 DSVQCFGRKKTTVAVTHCKTGRGLIKINGVPIELIQPEILRYKAFEPILLLGHHRFAGVD 324
           DSVQCFGRKKT VAVT+CK GRGLIKING PIELI+PEILRYKAFEPILLLG HRFAGVD
Sbjct: 5   DSVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRYKAFEPILLLGRHRFAGVD 64

Query: 325 MRIRVKGGGHTSQIYAIRQSISKALVAYYQKYVGEQAKKEIKDILVRYDRTLLVADPRRC 504
           MRIRVKGGGHTSQIYAIRQSI+KALVA+YQKYV EQ+KKEIKDILVRYDRTLLVADPRRC
Sbjct: 65  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 124

Query: 505 EPKKFGGRGARARFQKSYR 561
           EPKKFGGRGARARFQKSYR
Sbjct: 125 EPKKFGGRGARARFQKSYR 143


>ref|XP_002314714.1| predicted protein [Populus trichocarpa] gi|118481485|gb|ABK92685.1|
           unknown [Populus trichocarpa]
           gi|222863754|gb|EEF00885.1| predicted protein [Populus
           trichocarpa]
          Length = 144

 Score =  262 bits (669), Expect = 6e-68
 Identities = 128/144 (88%), Positives = 136/144 (94%)
 Frame = +1

Query: 130 MATPKDSVQCFGRKKTTVAVTHCKTGRGLIKINGVPIELIQPEILRYKAFEPILLLGHHR 309
           MA PK+SVQCFGRKKT VAVTHCK GRGLIKING PIEL++PEILR+KA+EPILLLG  R
Sbjct: 1   MAAPKESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRQR 60

Query: 310 FAGVDMRIRVKGGGHTSQIYAIRQSISKALVAYYQKYVGEQAKKEIKDILVRYDRTLLVA 489
           FAGVDMRIRVKGGGHTSQIYAIRQSI+KALVA+YQKYV EQ+KKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 490 DPRRCEPKKFGGRGARARFQKSYR 561
           DPRRCE KKFGGRGARARFQKSYR
Sbjct: 121 DPRRCETKKFGGRGARARFQKSYR 144


Top