BLASTX nr result
ID: Panax21_contig00007109
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00007109
(635 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 286 2e-75
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 285 4e-75
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 276 3e-72
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi... 263 3e-68
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 261 6e-68
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 286 bits (733), Expect = 2e-75
Identities = 135/183 (73%), Positives = 161/183 (87%)
Frame = +2
Query: 2 DMPERDSVSWNTIIDGYAKAGELNAAFELFEQMPDRNVVSWSTMLSGYSKAGDMETARML 181
+MPERD+VSWNTI+DGY KAGE+NAAFELFE+MP RNVVSWSTM+ GYSKAGDM+ AR+L
Sbjct: 208 EMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARIL 267
Query: 182 FDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLL 361
FDKMPVKNLV WTI+ISGYAEKG K+AINLYNQM+EA L+ DDGT+IS+L+ACA SGLL
Sbjct: 268 FDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLL 327
Query: 362 GLGERVHETIERSRYQCSIHACNALLDMYAKCGSLNRALDVFNRMGKRDLVSWNTIIHGL 541
GLG+RVH +IER+R++CS NAL+DMYAKCGSL AL +F+ M ++D+VSWN II GL
Sbjct: 328 GLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGL 387
Query: 542 AMH 550
AMH
Sbjct: 388 AMH 390
Score = 73.6 bits (179), Expect = 3e-11
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 41/223 (18%)
Frame = +2
Query: 5 MPERDSVSWNTIIDGYAKAGELNAAFELFEQMP-------DRNVVSW------------- 124
MP ++ V W +I GYA+ G A L+ QM D V+S
Sbjct: 271 MPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG 330
Query: 125 -------------------STMLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEK 247
+ ++ Y+K G +E A +F M K++VSW II G A
Sbjct: 331 KRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMH 390
Query: 248 GFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERS-RYQCSIHA 424
G ++A+ L+++M PD T + VL AC +G + G +ER +
Sbjct: 391 GHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEH 450
Query: 425 CNALLDMYAKCGSLNRALDVFNRMG-KRDLVSWNTIIHGLAMH 550
++D+ + G L A + + M + + + W T++ MH
Sbjct: 451 YGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMH 493
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Frame = +2
Query: 131 MLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPD 310
+++ +S M A +F+++ +++ + +I + A +++ +M ++ + D
Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114
Query: 311 DGTIISVLAACAESGLLGLGERVHETIERSRYQCSIHACNALLDMYAKCG--SLNRALDV 484
+ T +L AC+ + + E +H +E+ + I N+L+D Y KCG + A V
Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV 174
Query: 485 FNRMGKRDLVSWNTIIHGL 541
F M +RD VSWN++I GL
Sbjct: 175 FEVMAERDTVSWNSMIGGL 193
>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 285 bits (730), Expect = 4e-75
Identities = 132/183 (72%), Positives = 159/183 (86%)
Frame = +2
Query: 2 DMPERDSVSWNTIIDGYAKAGELNAAFELFEQMPDRNVVSWSTMLSGYSKAGDMETARML 181
+MP +D+VSWNTI+DGY KAGE+N AF LFE MP+RNVVSWSTM+SGY KAGDME ARML
Sbjct: 37 EMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARML 96
Query: 182 FDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLL 361
FD+MPVKNLVSWTII+SGYA KG K+AI + QM+EA L+PDDGT+IS+LA+CAESGLL
Sbjct: 97 FDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLL 156
Query: 362 GLGERVHETIERSRYQCSIHACNALLDMYAKCGSLNRALDVFNRMGKRDLVSWNTIIHGL 541
GLG+RVH +IER RY+CS++ NAL+DMYAKCG ++RAL VFN M K+DLVSWN ++ GL
Sbjct: 157 GLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGL 216
Query: 542 AMH 550
AMH
Sbjct: 217 AMH 219
Score = 79.7 bits (195), Expect = 4e-13
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Frame = +2
Query: 5 MPERDSVSWNTIIDGYAKAGELNAAFELFEQMP-------DRNVVSW------------- 124
MP ++ VSW I+ GYA G A FEQM D V+S
Sbjct: 100 MPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLG 159
Query: 125 -------------------STMLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEK 247
+ ++ Y+K G ++ A +F+ M K+LVSW ++ G A
Sbjct: 160 KRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMH 219
Query: 248 GFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERS-RYQCSIHA 424
G ++A+ L++ M + RPD T+++VL AC +G + G R +ER I
Sbjct: 220 GHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEH 279
Query: 425 CNALLDMYAKCGSLNRALDVFNRMG-KRDLVSWNTIIHGLAMH 550
++D+ + G L A + M + ++V W T++ MH
Sbjct: 280 YGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322
Score = 77.4 bits (189), Expect = 2e-12
Identities = 44/154 (28%), Positives = 73/154 (47%)
Frame = +2
Query: 86 LFEQMPDRNVVSWSTMLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEKGFVKEA 265
LF+ M +R+VVSW++M+ G K G++ A LFD+MP+K+ VSW I+ GY + G + +A
Sbjct: 3 LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKA 62
Query: 266 INLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERSRYQCSIHACNALLDM 445
L+ M E ++ + + ++
Sbjct: 63 FGLFESMPER---------------------------------------NVVSWSTMVSG 83
Query: 446 YAKCGSLNRALDVFNRMGKRDLVSWNTIIHGLAM 547
Y K G + A +F+RM ++LVSW I+ G A+
Sbjct: 84 YCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAV 117
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 276 bits (705), Expect = 3e-72
Identities = 132/201 (65%), Positives = 165/201 (82%)
Frame = +2
Query: 2 DMPERDSVSWNTIIDGYAKAGELNAAFELFEQMPDRNVVSWSTMLSGYSKAGDMETARML 181
+M ERD+VSWNTI+DGY KAGE++ AF LFE+MP+RNVVSWSTM+SGY K GDME ARML
Sbjct: 214 EMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARML 273
Query: 182 FDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLL 361
FDKMP KNLV+WTIIISG+AEKG KEA LYNQM+ A L+PDDGT+IS+LAACAESGLL
Sbjct: 274 FDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLL 333
Query: 362 GLGERVHETIERSRYQCSIHACNALLDMYAKCGSLNRALDVFNRMGKRDLVSWNTIIHGL 541
LG++VH +I++ R +CS++ NAL+DMYAKCG +++AL +FN M RDLVSWN ++ GL
Sbjct: 334 VLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGL 393
Query: 542 AMHRIRELLR*KPRVFSKLQR 604
AMH E ++FSK+Q+
Sbjct: 394 AMHGHGEK---AIQLFSKMQQ 411
Score = 75.5 bits (184), Expect = 8e-12
Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 41/250 (16%)
Frame = +2
Query: 5 MPERDSVSWNTIIDGYAKAGELNAAFELFEQMP-------DRNVVSW------------- 124
MP ++ V+W II G+A+ G A L+ QM D ++S
Sbjct: 277 MPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLG 336
Query: 125 -------------------STMLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEK 247
+ ++ Y+K G ++ A +F++M +++LVSW ++ G A
Sbjct: 337 KKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMH 396
Query: 248 GFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERSR-YQCSIHA 424
G ++AI L+++M + +PD T+I++L AC +G + G ++ER I
Sbjct: 397 GHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEH 456
Query: 425 CNALLDMYAKCGSLNRALDVFNRMG-KRDLVSWNTIIHGLAMHRIRELLR*KPRVFSKLQ 601
++D+ + G L A + M + + V W T++ +H L +V +L
Sbjct: 457 YGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAE---KVLDRLI 513
Query: 602 RICSGDC*NY 631
+ D NY
Sbjct: 514 TLEQSDPGNY 523
Score = 68.6 bits (166), Expect = 9e-10
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Frame = +2
Query: 56 KAGELNAAFELFEQMPDRNVVS----WSTMLSGYSKAGDMETARMLFDKMPVKNLVSWTI 223
K + N E+ Q+ RN+ + ++S +S M A +F+++ N+ +
Sbjct: 32 KCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNT 91
Query: 224 IISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERSR 403
+I + + +A + M + L D+ T +L AC G L + +H +E+
Sbjct: 92 LIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYG 151
Query: 404 YQCSIHACNALLDMYAKCGSL--NRALDVFNRMGKRDLVSWNTIIHGL 541
+ + N+L+D Y+KCG L N A+ +F MG++DLVSWN++I GL
Sbjct: 152 FFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGL 199
>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 263 bits (671), Expect = 3e-68
Identities = 117/183 (63%), Positives = 157/183 (85%)
Frame = +2
Query: 2 DMPERDSVSWNTIIDGYAKAGELNAAFELFEQMPDRNVVSWSTMLSGYSKAGDMETARML 181
+MPE+D +SWNT++DGY K G+++ AF+LF++MP+RNVVSWSTM+ GY KAGDME ARML
Sbjct: 212 EMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARML 271
Query: 182 FDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLL 361
FDKMPVKNLVSWTII+SG+AEKG +EAI+L++QM++A L+ D+GT++S+LAACAESGLL
Sbjct: 272 FDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLL 331
Query: 362 GLGERVHETIERSRYQCSIHACNALLDMYAKCGSLNRALDVFNRMGKRDLVSWNTIIHGL 541
GLGE++H +I+ + ++C+ NAL+DMYAKCG LN A DVFN + +D+VSWN ++ GL
Sbjct: 332 GLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGL 391
Query: 542 AMH 550
AMH
Sbjct: 392 AMH 394
Score = 79.3 bits (194), Expect = 5e-13
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 41/230 (17%)
Frame = +2
Query: 5 MPERDSVSWNTIIDGYAKAGELNAAFELFEQMPD-------------------------- 106
MP ++ VSW I+ G+A+ G A LF+QM
Sbjct: 275 MPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLG 334
Query: 107 --------RNVVSWSTMLSG-----YSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEK 247
N +T +S Y+K G + A +F+ + K++VSW ++ G A
Sbjct: 335 EKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMH 394
Query: 248 GFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERS-RYQCSIHA 424
G +A+ L+ +M E P+ T+I VL AC +GL+ G R T+ER +
Sbjct: 395 GHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEH 454
Query: 425 CNALLDMYAKCGSLNRALDVFNRMGKR-DLVSWNTIIHGLAMHRIRELLR 571
++D+ + G L A+ + M + + W T++ MH EL R
Sbjct: 455 YGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAR 504
Score = 63.9 bits (154), Expect = 2e-08
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Frame = +2
Query: 131 MLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPD 310
++S +S M A F+++ N+ + +I ++ +A + M D
Sbjct: 58 LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYAD 117
Query: 311 DGTIISVLAACAESGLLGLGERVHETIERSRYQCSIHACNALLDMYAKCGS--LNRALDV 484
+ T +L C + L + E VH IE+ + + N+L+D Y+KCGS ++ A +
Sbjct: 118 NFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKL 177
Query: 485 FNRMG-KRDLVSWNTIIHGLAMHRIRELLR*KPRVFSKL 598
F MG +RD+VSWN++I GLA + E R +VF ++
Sbjct: 178 FVSMGARRDVVSWNSMISGLAKGGLYEEAR---KVFDEM 213
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 261 bits (668), Expect = 6e-68
Identities = 120/184 (65%), Positives = 152/184 (82%), Gaps = 1/184 (0%)
Frame = +2
Query: 2 DMPERDSVSWNTIIDGYAKAGELNAAFELFEQMPDRNVVSWSTMLSGYSKAGDMETARML 181
+MPERD VSWNT++DGYAKAGE++ AFELFE+MP RN+VSWSTM+ GYSK GDM+ AR+L
Sbjct: 213 EMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVL 272
Query: 182 FDKMPVKNLVSWTIIISGYAEKGFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLL 361
FD+ P KN+V WT II+GYAEKGFV+EA LY +M+EA LRPDDG +IS+LAACAESG+L
Sbjct: 273 FDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGML 332
Query: 362 GLGERVHETIERSRYQCSIHACNALLDMYAKCGSLNRALDVFN-RMGKRDLVSWNTIIHG 538
GLG+R+H ++ R R++C NA +DMYAKCG L+ A DVF+ M K+D+VSWN++I G
Sbjct: 333 GLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQG 392
Query: 539 LAMH 550
AMH
Sbjct: 393 FAMH 396
Score = 67.4 bits (163), Expect = 2e-09
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Frame = +2
Query: 131 MLSGYSKAGDMETARMLFDKMPVKNLVSWTIIISGYAEK-GFVKEAINLYNQMDEARLRP 307
+++ +S + +A +F+ +P N+ + II +A N + QM + L P
Sbjct: 59 LIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFP 118
Query: 308 DDGTIISVLAACAESGLLGLGERVHETIERSRYQCSIHACNALLDMYAKCGS--LNRALD 481
D+ T +L AC L L +H +E+ + I N+L+D Y++CGS L+ A+
Sbjct: 119 DNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMS 178
Query: 482 VFNRMGKRDLVSWNTIIHGL 541
+F M +RD+V+WN++I GL
Sbjct: 179 LFLAMKERDVVTWNSMIGGL 198
Score = 64.3 bits (155), Expect = 2e-08
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 44/225 (19%)
Frame = +2
Query: 8 PERDSVSWNTIIDGYAKAGELNAAFELFEQM------PDRNVV----------------- 118
P ++ V W TII GYA+ G + A EL+ +M PD +
Sbjct: 277 PAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGK 336
Query: 119 -------SW---------STMLSGYSKAGDMETARMLFDKMPVK-NLVSWTIIISGYAEK 247
W + + Y+K G ++ A +F M K ++VSW +I G+A
Sbjct: 337 RIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMH 396
Query: 248 GFVKEAINLYNQMDEARLRPDDGTIISVLAACAESGLLGLGERVHETIERSR---YQCSI 418
G ++A+ L+++M PD T + +L AC +GL+ G + ++E+ Q
Sbjct: 397 GHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEH 456
Query: 419 HACNALLDMYAKCGSLNRALDVFNRMG-KRDLVSWNTIIHGLAMH 550
+ C ++D+ + G L A + M + + + T+++ MH
Sbjct: 457 YGC--MMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMH 499