BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00006429
         (3166 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1516   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1515   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1514   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1513   0.0  
ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1512   0.0  

>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1516 bits (3924), Expect = 0.0
 Identities = 739/989 (74%), Positives = 843/989 (85%), Gaps = 2/989 (0%)
 Frame = +2

Query: 203  MGSEGSETDTIVTQISVGGFDNYITAKRLSEYFEDNIGGVWRCRLKTSSTPPESYPDFEI 382
            MGSEG E + +VTQISVGGFDN + AK LSEY E+ +G VWRCRLK SSTPP+SYP ++I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 383  NTENIQRTNTYEKVEPHAFVHFVLPDSARAAHNAAGHVELIIEKNPLKVSLGPENPHRMN 562
            + E +QR N YEKV PHAFVHF   +SA+ A  AAG  ELI+ K PL VSLGPENP+R+N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 563  QRRRTKAPFKLSDVRVEIGTWVSKDKFFVAWRGLPTGVDFLVDPFDGTCKFLFTKDTAFS 742
            QRRRT  PFK SDV VE+G  VSKD F V WRG  TGVDFLVDPF+GTCK LFTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 743  FKGTGNHAVVKCNYKVEFLVRDIKEIKQYTDTSHLIILLQLESSPQVYYRTADDDVEESV 922
            F+G   HA++KCN+K+EFLVR+I EIK+  D + L+IL QL SSP V+YRTADDD+EESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 923  PFDLLDDDDPWIRTTDFTLCGAIGRCSTYRILIPPRHGIKLKKAMKYLLERRVPSENL-- 1096
             FDLLDDDD WIRTTD T  GAIGRC+TYRI I PR+G   +KAM Y   RRVP   +  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1097 RKPLQIKDEPDFGTRMSYPFFCIQFKGISFKILFLVNAVMHKGIFNQYQLSKEFFNLLRS 1276
            RK L++KDEPDFG  MS PFFC Q +GISF++LFLVNAV+HKGI NQ+Q++ EFF LLRS
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQNEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRS 360

Query: 1277 QPDEVNVAALKHICASKRPDFNAYERMRRVQGWLMKNPKLLERTRELDDIVEVRRLVITP 1456
              +EVN AALKH+ + K P  +A +++  +Q WL+KNPKLL+RT ELDDIVEVRRLVITP
Sbjct: 361  HQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITP 420

Query: 1457 TKAYCLPPEVELSNRVLRNYRSVADRFLRVTFMDEGMQTLNKNVMTYYPAPIVRDITSNS 1636
            TKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NV+TYY A IVR+ITSNS
Sbjct: 421  TKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNS 480

Query: 1637 NAQKTTVFRRVKNILSEGFVLCGRKYSFLAFSANQLRDRSAWFFAEEKNTCVPDILKWMG 1816
            N Q+T +F+RVK+ILS+GF LCGRKYSFLAFSANQLRDRSAWFFAE+    VP I+ WMG
Sbjct: 481  NPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMG 540

Query: 1817 RFSEKNVAKCAARMGQCFSSTYATVEVPHSEVDSELPDIVRNGYVFSDGIGMISDDLAME 1996
            RFS +NVAKCAARMGQCFSSTYATVEVP SEV+SELPDI RNGYVFSDGIGMIS DLA+E
Sbjct: 541  RFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIE 600

Query: 1997 VAERLHLKVNPPCAYQIRYAGCKGVVACWPACKDGIRLSLRLSMNKFVSKHTILEICSWT 2176
            VAE+LHL VNPP AYQIRYAGCKGVVACWP   DGIRLSLR SM KF S HTILEICSWT
Sbjct: 601  VAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 2177 RFQPGFLNRQIITLLSALNVCDDIFWEMQESMVYKLNQMLVNADTAFDVLTASCAEEGNT 2356
            RFQPGFLNRQI+TLLS+L+V D IFWEMQ+ M+  L++MLV++D AFDV+TASCAE GNT
Sbjct: 661  RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT 720

Query: 2357 AAIMLSAGFKPQTEPHLRGMLTSIRAAQFGDLREKARIFVPSGRWLMGCLDELGILEQGQ 2536
            AA+MLSAGFKPQ+EPHLRGML+SIRA+Q GDLR KARIFVPSGRWLMGCLDELG LEQGQ
Sbjct: 721  AALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780

Query: 2537 CFIQLSNPSLENCFAKHGFKFSETKKDIEVIKGYVVVAKNPCLHPGDVRILEAVDVPSLH 2716
            CFIQ+S+PSLENCF KHG KFS+ KK+++V+KG VV+AKNPCLHPGDVRILEAVDVPSL 
Sbjct: 781  CFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLS 840

Query: 2717 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWLPMDYAPPEVRKLP 2896
            HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW+PM+Y P EV++L 
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLG 900

Query: 2897 RGVQHKDIIEFFTRNMVNENLGTICNAHVVHADSSEYGALDENCIKLAELAATAVDFPKT 3076
            R V H DII+FF++NMV E+LG ICNAHVVHAD SE+GALDE C+KLAELAA AVDFPKT
Sbjct: 901  RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960

Query: 3077 GKIVNMPSELKPKLYPDFMGKEEFQSYKS 3163
            GK+V MP +LKPK+YPDFMGKEEFQSYKS
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEEFQSYKS 989


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1515 bits (3922), Expect = 0.0
 Identities = 737/989 (74%), Positives = 842/989 (85%), Gaps = 2/989 (0%)
 Frame = +2

Query: 203  MGSEGSETDTIVTQISVGGFDNYITAKRLSEYFEDNIGGVWRCRLKTSSTPPESYPDFEI 382
            MGSEGSE D +VTQISVGGFDN + AK LSEY E+ +G VWRCRLK SSTPP+SYP F++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 383  NTENIQRTNTYEKVEPHAFVHFVLPDSARAAHNAAGHVELIIEKNPLKVSLGPENPHRMN 562
            + E +QR   YEKV PHAFVHF   +SA+ A  AAG  ELI+ K PL VSLGPENP+R+N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 563  QRRRTKAPFKLSDVRVEIGTWVSKDKFFVAWRGLPTGVDFLVDPFDGTCKFLFTKDTAFS 742
            QRRRT  PFK SDV +E+G  VSKD F V WRG  TGVDFLVDPF+G CK LFTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 743  FKGTGNHAVVKCNYKVEFLVRDIKEIKQYTDTSHLIILLQLESSPQVYYRTADDDVEESV 922
            F+G   HA++KCN+K+EFLVR+I EIK+  D + L+ILLQL SSP V+YRTADDD+EESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 923  PFDLLDDDDPWIRTTDFTLCGAIGRCSTYRILIPPRHGIKLKKAMKYLLERRVPSENL-- 1096
             FDLLDDDD WIRTTD T  GAIGRC+TYRI I PR+G   +KAM Y    RVP   +  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1097 RKPLQIKDEPDFGTRMSYPFFCIQFKGISFKILFLVNAVMHKGIFNQYQLSKEFFNLLRS 1276
            RK L+++DEPDFG  MS PFFC Q +GISFK++FLVNAV+HKGI NQ+Q++ EFF LLRS
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRS 360

Query: 1277 QPDEVNVAALKHICASKRPDFNAYERMRRVQGWLMKNPKLLERTRELDDIVEVRRLVITP 1456
              +EVN+AALKH+ + K P  +A +++  ++ WL+KNPKLLERT ELDDIVEVRRLVITP
Sbjct: 361  HQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVITP 420

Query: 1457 TKAYCLPPEVELSNRVLRNYRSVADRFLRVTFMDEGMQTLNKNVMTYYPAPIVRDITSNS 1636
            TKAYCLPP VELSNRVLRNY+ VADRFLRVTFMDEGM+ LN+NV+TYY A IVR+ITSNS
Sbjct: 421  TKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNS 480

Query: 1637 NAQKTTVFRRVKNILSEGFVLCGRKYSFLAFSANQLRDRSAWFFAEEKNTCVPDILKWMG 1816
            N Q+T +F+RVK+ILS GF LCGRKYSFLAFSANQLRDRSAWFFAE+    VP I+ WMG
Sbjct: 481  NPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMG 540

Query: 1817 RFSEKNVAKCAARMGQCFSSTYATVEVPHSEVDSELPDIVRNGYVFSDGIGMISDDLAME 1996
            RFS +NVAKCAARMGQCFSSTYATVEVP SEV+SELPDI RNGYVFSDGIGMIS DLA+E
Sbjct: 541  RFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAVE 600

Query: 1997 VAERLHLKVNPPCAYQIRYAGCKGVVACWPACKDGIRLSLRLSMNKFVSKHTILEICSWT 2176
            VAE+LHL VNPP AYQIRYAGCKGVVACWP   DGIRLSLR SM KF S HTILEICSWT
Sbjct: 601  VAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT 660

Query: 2177 RFQPGFLNRQIITLLSALNVCDDIFWEMQESMVYKLNQMLVNADTAFDVLTASCAEEGNT 2356
            RFQPGFLNRQI+TLLS+L+V D IFWEMQ+ M+  L++MLV++D AFDV+TASCAE GNT
Sbjct: 661  RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT 720

Query: 2357 AAIMLSAGFKPQTEPHLRGMLTSIRAAQFGDLREKARIFVPSGRWLMGCLDELGILEQGQ 2536
            AAIMLSAGFKPQ+EPHLRGML+SIRA+Q GDLR KARIFVPSGRWLMGCLDELG LEQGQ
Sbjct: 721  AAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ 780

Query: 2537 CFIQLSNPSLENCFAKHGFKFSETKKDIEVIKGYVVVAKNPCLHPGDVRILEAVDVPSLH 2716
            CFIQ+S+PSLENCF KHG KFS+ KK+++V+KG VV+AKNPCLHPGDVRILEAVDVP LH
Sbjct: 781  CFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH 840

Query: 2717 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWLPMDYAPPEVRKLP 2896
            HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSKKSW+PM+Y P EV+++ 
Sbjct: 841  HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMG 900

Query: 2897 RGVQHKDIIEFFTRNMVNENLGTICNAHVVHADSSEYGALDENCIKLAELAATAVDFPKT 3076
            R V H DII+FF++NMV E+LG ICNAHVVHAD SE+GALDE C+KLAELAA AVDFPKT
Sbjct: 901  RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT 960

Query: 3077 GKIVNMPSELKPKLYPDFMGKEEFQSYKS 3163
            GK+V MP +LKPK+YPDFMGKEEFQSYKS
Sbjct: 961  GKLVTMPFDLKPKMYPDFMGKEEFQSYKS 989


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1514 bits (3920), Expect = 0.0
 Identities = 728/990 (73%), Positives = 840/990 (84%), Gaps = 2/990 (0%)
 Frame = +2

Query: 203  MGSEGSETDTIVTQISVGGFDNYITAKRLSEYFEDNIGGVWRCRLKTSSTPPESYPDFEI 382
            M ++  E +T+VTQ+S GGFD  +TA+ L  Y ++ IG VWRCRLKTS TPPESYP+FEI
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 383  -NTENIQRTNTYEKVEPHAFVHFVLPDSARAAHNAAGHVELIIEKNPLKVSLGPENPHRM 559
             +T  IQR + Y +VEPHAFVHF  PDSA  A NAAGH EL     P+KVSLGPENP  +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 560  NQRRRTKAPFKLSDVRVEIGTWVSKDKFFVAWRGLPTGVDFLVDPFDGTCKFLFTKDTAF 739
            NQRRRT  PFKLSDV VEIGT VS+D+F V WRG P+GVDFLVDPFDG CKF FT+DTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 740  SFKGTGNHAVVKCNYKVEFLVRDIKEIKQYTDTSHLIILLQLESSPQVYYRTADDDVEES 919
            SFKGT  HAV++C++K+EFLVRDI EIKQYTDTS L+ILLQL S+P V+YRTADDD+E  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 920  VPFDLLDDDDPWIRTTDFTLCGAIGRCSTYRILIPPRHGIKLKKAMKYLLERRVPSENLR 1099
            VPFDLLDDDDPWIRTTDFT  GAIGRC++YR+ IPPRHG KLK+A+ +L ERRV  + LR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1100 KPLQIKDEPDFGTRMSYPFFCIQFK-GISFKILFLVNAVMHKGIFNQYQLSKEFFNLLRS 1276
            +PL +  EP++   MS PFFCI  + G+ F ++FLVNAVMHKGIFNQ+QLS  FF+LLR+
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 1277 QPDEVNVAALKHICASKRPDFNAYERMRRVQGWLMKNPKLLERTRELDDIVEVRRLVITP 1456
            QP +VN+AAL+HIC+ K P F+A++R++ VQ WL+KNPKL   +++LDDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1457 TKAYCLPPEVELSNRVLRNYRSVADRFLRVTFMDEGMQTLNKNVMTYYPAPIVRDITSNS 1636
            T+AYCLPPEVELSNRVLR Y+ +AD+FLRVTFMDEG+QT+N N +TYY APIVRDITSNS
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1637 NAQKTTVFRRVKNILSEGFVLCGRKYSFLAFSANQLRDRSAWFFAEEKNTCVPDILKWMG 1816
             +QKT +F+RVK+IL++GF LCGRKYSFLAFS+NQLRDRSAWFFAE+  T V  I  WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1817 RFSEKNVAKCAARMGQCFSSTYATVEVPHSEVDSELPDIVRNGYVFSDGIGMISDDLAME 1996
            +F+ +N+AKCAARMGQCFSSTYATVEVP +E   +LPDI RN Y+FSDGIGMI+ DLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1997 VAERLHLKVNPPCAYQIRYAGCKGVVACWPACKDGIRLSLRLSMNKFVSKHTILEICSWT 2176
            VAE+L L+VNPPCAYQIRYAGCKGVVACWPA  DGIRLSLR+SMNKF S HT LEICSWT
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 2177 RFQPGFLNRQIITLLSALNVCDDIFWEMQESMVYKLNQMLVNADTAFDVLTASCAEEGNT 2356
            RFQPGFLNRQIITLLS L+V D+IFW+MQ  MV KLNQM ++AD AFDV+TASCAE+GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 2357 AAIMLSAGFKPQTEPHLRGMLTSIRAAQFGDLREKARIFVPSGRWLMGCLDELGILEQGQ 2536
            AAIMLSAGF P+TEPHL GMLT IRAAQ   LREK RIFVPSGRWLMGCLDELG+LE GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 2537 CFIQLSNPSLENCFAKHGFKFSETKKDIEVIKGYVVVAKNPCLHPGDVRILEAVDVPSLH 2716
            CFIQ+SNPSLE+CF KHG +FSE+KK ++V+KG VVVAKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 2717 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWLPMDYAPPEVRKLP 2896
            HL DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SWLPM Y   E ++L 
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 2897 RGVQHKDIIEFFTRNMVNENLGTICNAHVVHADSSEYGALDENCIKLAELAATAVDFPKT 3076
            R V H+DII+FF +NMVNENLG ICNAHVVHAD SEYGALDENCIKLAELAATAVDFPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 3077 GKIVNMPSELKPKLYPDFMGKEEFQSYKSN 3166
            GK+V MP  LKPKLYPDFMGKE++QSY SN
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSN 990


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1513 bits (3916), Expect = 0.0
 Identities = 731/989 (73%), Positives = 837/989 (84%), Gaps = 2/989 (0%)
 Frame = +2

Query: 203  MGSEGSETDTIVTQISVGGFDNYITAKRLSEYFEDNIGGVWRCRLKTSSTPPESYPDFEI 382
            M +EGS  +T+VTQ+S+GGFD ++TAK L EY E  IG VWRCRLKTS TPPESYP+FEI
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 383  -NTENIQRTNTYEKVEPHAFVHFVLPDSARAAHNAAGHVELIIEKNPLKVSLGPENPHRM 559
             +   I RT  Y +VEPHAFVHF LP SA  A +AA   EL +    LK SLGPENP  +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 560  NQRRRTKAPFKLSDVRVEIGTWVSKDKFFVAWRGLPTGVDFLVDPFDGTCKFLFTKDTAF 739
            NQRRR   PFKLS V VEIGT VS+D+FFV WRG PTGVDFLVDPFDGTC+F F+++TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 740  SFKGTGNHAVVKCNYKVEFLVRDIKEIKQYTDTSHLIILLQLESSPQVYYRTADDDVEES 919
            SFK T  HAV+KC++KVEFLVRDI EIKQYT+TS L++LLQL S+P+V+YRTADDD+E S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 920  VPFDLLDDDDPWIRTTDFTLCGAIGRCSTYRILIPPRHGIKLKKAMKYLLERRVPSENLR 1099
            VPFDLLDDDDPWIRTTDFT  GAIGRC +YR+ IPPRHG KL+KA+ +L ERRV  E LR
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 1100 KPLQIKDEPDFGTRMSYPFFCIQFK-GISFKILFLVNAVMHKGIFNQYQLSKEFFNLLRS 1276
            +P++I+DEPDFG  M+ PFFCI  K GI+F +LFLVNAVMHKGIFNQ+QLS +FF+LLR+
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 1277 QPDEVNVAALKHICASKRPDFNAYERMRRVQGWLMKNPKLLERTRELDDIVEVRRLVITP 1456
            QP EVNVAALKHI   +RP F+AY++++  Q WL+KNPK  +  ++LDDI E+RRLVITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1457 TKAYCLPPEVELSNRVLRNYRSVADRFLRVTFMDEGMQTLNKNVMTYYPAPIVRDITSNS 1636
            TKAYCLPPEVELSNRVLR Y+ VADRFLRVTFMDEG+QT+N N + Y+ APIVR ITS S
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 1637 NAQKTTVFRRVKNILSEGFVLCGRKYSFLAFSANQLRDRSAWFFAEEKNTCVPDILKWMG 1816
              QKT +F+RV++IL+EGF LCGR+YSFLAFS+NQLRDRSAWFFAE++N  V  I  WMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 1817 RFSEKNVAKCAARMGQCFSSTYATVEVPHSEVDSELPDIVRNGYVFSDGIGMISDDLAME 1996
            +F+ KN+AKCAARMGQCFSSTYAT+EVP  EV+S+LPDI RNGY FSDGIGMI+ DLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 1997 VAERLHLKVNPPCAYQIRYAGCKGVVACWPACKDGIRLSLRLSMNKFVSKHTILEICSWT 2176
            VAE+L    +PPCAYQIRYAGCKGVVACWP   DGIRLSLR SMNKF S HTILEICSWT
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 2177 RFQPGFLNRQIITLLSALNVCDDIFWEMQESMVYKLNQMLVNADTAFDVLTASCAEEGNT 2356
            RFQPGFLNRQIITLLSALNV D +FW+MQE MV KLNQMLV++D AFDVLTASCAE+GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 2357 AAIMLSAGFKPQTEPHLRGMLTSIRAAQFGDLREKARIFVPSGRWLMGCLDELGILEQGQ 2536
            AAIMLSAGFKPQ EPHLRGMLT +RAAQ   LREKARIFVPSGRWLMGCLDELG+LEQGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 2537 CFIQLSNPSLENCFAKHGFKFSETKKDIEVIKGYVVVAKNPCLHPGDVRILEAVDVPSLH 2716
            CFIQ+SN  LENCF KHG KFSETKK+++V+KG VV+AKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 2717 HLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWLPMDYAPPEVRKLP 2896
            HL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y   E ++L 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 2897 RGVQHKDIIEFFTRNMVNENLGTICNAHVVHADSSEYGALDENCIKLAELAATAVDFPKT 3076
            R V H+DI+EFF +NM NENLG ICNAHVV AD SEYGALDE C+ LAELAATAVDFPKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 3077 GKIVNMPSELKPKLYPDFMGKEEFQSYKS 3163
            GKIV+MPS+LKPK+YPDFMGKEE QSYKS
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKS 989


>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1512 bits (3915), Expect = 0.0
 Identities = 729/992 (73%), Positives = 839/992 (84%), Gaps = 5/992 (0%)
 Frame = +2

Query: 203  MGSEGSETDTIVTQISVGGFDNYITAKRLSEYFEDNIGGVWRCRLKTSSTPPESYPDFEI 382
            M +EGS  +T+VTQ+SVGGFD ++TAK L EY +  IG VWRCRLKTS TPPESYP+FEI
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 383  -NTENIQRTNTYEKVEPHAFVHFVLPDSARAAHNAAGHVELIIEKNPLKVSLGPENPHRM 559
             +   I+RT  Y +V PHAFVHF LP SA  A NA+G  EL +    LKVSLGP+NP  +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 560  NQRRRTKAPFKLSDVRVEIGTWVSKDKFFVAWRGLPTGVDFLVDPFDGTCKFLFTKDTAF 739
            NQRRRT  PFKLSDV  EIG  VS+D+FFV WRG P+GVDFLVDPFDGTCKF F+++TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 740  SFKGTGNHAVVKCNYKVEFLVRDIKEIKQYTDTSHLIILLQLESSPQVYYRTADDDVEES 919
            S K T  HAV+KC++KVEFLVRDI EI QYT+TS L++LLQL S+P V+YRTADDD+E  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 920  VPFDLLDDDDPWIRTTDFTLCGAIGRCSTYRILIPPRHGIKLKKAMKYLLERRVP---SE 1090
            VPFDLLDDDDPWIRTTDFT  GAIGRC +YR+ IPPRHG KL+KA+KYL ERRV     E
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1091 NLRKPLQIKDEPDFGTRMSYPFFCIQFK-GISFKILFLVNAVMHKGIFNQYQLSKEFFNL 1267
            N R+ ++I DEPDFG  MS PFFCI  K GI+F++LFLVNAVMHKGIFNQ+QLS +FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1268 LRSQPDEVNVAALKHICASKRPDFNAYERMRRVQGWLMKNPKLLERTRELDDIVEVRRLV 1447
            LR+Q  EVNV+ALKHIC  +RP FNAY R++ VQ WL+KNP L +  ++L D+VE+RRLV
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1448 ITPTKAYCLPPEVELSNRVLRNYRSVADRFLRVTFMDEGMQTLNKNVMTYYPAPIVRDIT 1627
            ITPTKAYCLPPEVELSNRVLR Y+ VADRFLRVTFMDEG+Q +N NV+ YY APIVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1628 SNSNAQKTTVFRRVKNILSEGFVLCGRKYSFLAFSANQLRDRSAWFFAEEKNTCVPDILK 1807
            SNS  QKT +F+RV++IL+EGF LCGR+YSFLAFSANQLRD+SAWFF+EE+N  V D+  
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1808 WMGRFSEKNVAKCAARMGQCFSSTYATVEVPHSEVDSELPDIVRNGYVFSDGIGMISDDL 1987
            WMG+F+ +N+AKCAARMGQCFSSTYAT+EVP  EV+S+LPDI RNGYVFSDGIG+I+ DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1988 AMEVAERLHLKVNPPCAYQIRYAGCKGVVACWPACKDGIRLSLRLSMNKFVSKHTILEIC 2167
            A EVAE+L L ++PPCAYQIRYAGCKGVVACWP   DG+RLSLR SMNKF S HT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2168 SWTRFQPGFLNRQIITLLSALNVCDDIFWEMQESMVYKLNQMLVNADTAFDVLTASCAEE 2347
            SWTRFQPGFLNRQIITLLS LNV D +FW+MQE+MV KLNQM VN+D AFDVLTASCA++
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2348 GNTAAIMLSAGFKPQTEPHLRGMLTSIRAAQFGDLREKARIFVPSGRWLMGCLDELGILE 2527
            GN AAIMLSAGFKP  EPHLRGMLT +RAAQ  DLREK RIFVPSGRWLMGCLDELG+LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2528 QGQCFIQLSNPSLENCFAKHGFKFSETKKDIEVIKGYVVVAKNPCLHPGDVRILEAVDVP 2707
            QGQCFIQ+SN SLE CF KHG KFSE +K+++VIKG VV+AKNPCLHPGDVR+LEAVDVP
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2708 SLHHLFDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWLPMDYAPPEVR 2887
             LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y   E +
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2888 KLPRGVQHKDIIEFFTRNMVNENLGTICNAHVVHADSSEYGALDENCIKLAELAATAVDF 3067
             L R V H+DIIEFF +NMVN+NLG ICNAHVVHAD SEYGA D+NC+ LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3068 PKTGKIVNMPSELKPKLYPDFMGKEEFQSYKS 3163
            PKTGK+V+MP  LKPK+YPDFMGKEE+QSYKS
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKS 992