BLASTX nr result

ID: Panax21_contig00006255 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00006255
         (674 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28011.3| unnamed protein product [Vitis vinifera]               96   6e-18
ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vi...    92   9e-17
ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|22...    91   3e-16
ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis ...    80   5e-13
ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine ...    75   9e-12

>emb|CBI28011.3| unnamed protein product [Vitis vinifera]
          Length = 712

 Score = 95.9 bits (237), Expect = 6e-18
 Identities = 58/127 (45%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
 Frame = +2

Query: 290 MAYWLKAAEDLFEVVDRRAKLVVGDKPDEESNIQLPASNGQGSQVKRT--XXXXXXXXXX 463
           MA WLKAAEDLFEVVDRRAKLVV +  DE+ + Q P SNGQGSQ K+T            
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKAQKRL 60

Query: 464 XXNEFPTTSDSRVEEASSETSQLDVASDKNRATLSIDNNEISAVSSNTLISNKEQQQNVD 643
             NE    +D+   +  ++ +  D+A DK+RAT S +N+E ++ S++T  +N EQ QN +
Sbjct: 61  STNEPSKINDTAQVQTGTQPAVSDIAPDKDRATRSFENDETTS-SNSTAQANNEQLQNGN 119

Query: 644 GAGSVVG 664
              SV G
Sbjct: 120 KDASVFG 126


>ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera]
          Length = 694

 Score = 92.0 bits (227), Expect = 9e-17
 Identities = 58/125 (46%), Positives = 77/125 (61%)
 Frame = +2

Query: 290 MAYWLKAAEDLFEVVDRRAKLVVGDKPDEESNIQLPASNGQGSQVKRTXXXXXXXXXXXX 469
           MA WLKAAEDLFEVVDRRAKLVV +  DE+ + Q P SNGQGSQ K+T            
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKT------------ 48

Query: 470 NEFPTTSDSRVEEASSETSQLDVASDKNRATLSIDNNEISAVSSNTLISNKEQQQNVDGA 649
                 S S+V +  ++ +  D+A DK+RAT S +N+E ++ S++T  +N EQ QN +  
Sbjct: 49  ---KPKSKSKV-QTGTQPAVSDIAPDKDRATRSFENDETTS-SNSTAQANNEQLQNGNKD 103

Query: 650 GSVVG 664
            SV G
Sbjct: 104 ASVFG 108


>ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1|
           Golgin-84, putative [Ricinus communis]
          Length = 717

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 56/124 (45%), Positives = 75/124 (60%)
 Frame = +2

Query: 290 MAYWLKAAEDLFEVVDRRAKLVVGDKPDEESNIQLPASNGQGSQVKRTXXXXXXXXXXXX 469
           MA WLKAAEDLFEVVDRRAKLVV +  DE S+ Q PASNGQGSQ K              
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 470 NEFPTTSDSRVEEASSETSQLDVASDKNRATLSIDNNEISAVSSNTLISNKEQQQNVDGA 649
            E    S ++ E  +++TSQL++ S+ +RA LS++ ++ +  S + L    EQQQ+ D  
Sbjct: 61  IESDKASSAKAEFITTQTSQLEMESE-DRAALSVE-HDTAPTSKSILQVVAEQQQDTDKD 118

Query: 650 GSVV 661
            S +
Sbjct: 119 ASSI 122


>ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus]
           gi|449488127|ref|XP_004157946.1| PREDICTED: golgin
           candidate 1-like [Cucumis sativus]
          Length = 709

 Score = 79.7 bits (195), Expect = 5e-13
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = +2

Query: 290 MAYWLKAAEDLFEVVDRRAKLVVGDKPDEESNIQLPASNGQGSQVKRTXXXXXXXXXXXX 469
           MA W KAAE LFEVVDR+AKLVV +  +E+SN Q  ASNGQGSQ K+T            
Sbjct: 1   MASWFKAAEGLFEVVDRKAKLVVSELSEEQSNAQTAASNGQGSQTKKT--KPKKKKKVLS 58

Query: 470 NEFPTTSDSRVEEASSETSQLDV--ASDKNRATLSIDNNEISAVSSNTLISNKEQQQN 637
           NE PT S +  E++S+  S+ DV  +  K+    S +++ + +  S T ++ ++   N
Sbjct: 59  NELPTASATPEEQSSTLASKADVVLSPGKHGIVSSTEDDRMISDKSPTQVNERKPDDN 116


>ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max]
          Length = 702

 Score = 75.5 bits (184), Expect = 9e-12
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +2

Query: 290 MAYWLKAAEDLFEVVDRRAKLVVGDKPDEESNIQLPASNGQGSQVKRTXXXXXXXXXXXX 469
           M  WLKAAE LFEVVDRRAK V  D  +E+ + + PASNGQGSQ KRT            
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDSKSPASNGQGSQGKRT--KSKPKAQKAL 58

Query: 470 NEFPT-TSDSRVEEASSETSQLDVASDKNRATLSIDNNEISAVSSNTLISNKEQQQNVDG 646
           ++ PT  SD+  E++ S ++ +D+A+  ++    ID      VS++T  +  ++ Q  D 
Sbjct: 59  SDSPTIISDTTHEKSGSPSAPVDIATSIDKVDPEID------VSASTSTNQPKEPQPSDA 112

Query: 647 AGSVVGDS 670
              ++G S
Sbjct: 113 TSPLLGSS 120


Top