BLASTX nr result

ID: Panax21_contig00006170 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00006170
         (749 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300102.1| predicted protein [Populus trichocarpa] gi|1...   136   4e-30
ref|XP_004145671.1| PREDICTED: uncharacterized protein LOC101216...   129   7e-28
ref|XP_002268728.1| PREDICTED: uncharacterized protein LOC100241...   129   7e-28
emb|CAN82190.1| hypothetical protein VITISV_031115 [Vitis vinifera]   129   7e-28
pdb|3BBN|U Chain U, Homology Model For The Spinach Chloroplast 3...   129   7e-28

>ref|XP_002300102.1| predicted protein [Populus trichocarpa] gi|118487561|gb|ABK95607.1|
           unknown [Populus trichocarpa]
           gi|222847360|gb|EEE84907.1| predicted protein [Populus
           trichocarpa]
          Length = 176

 Score =  136 bits (343), Expect = 4e-30
 Identities = 66/110 (60%), Positives = 79/110 (71%)
 Frame = -3

Query: 489 TELMSVVCPSLAYANTLFFRSGYNVQVIVDDNEPEEKLLNRFRREVMRAGIIQESKRRKF 310
           TEL SVVCPSLAY+NTLFF+S YNVQV+V+DNEPEE+LLNRFRREVMRAG+IQE KRR+F
Sbjct: 59  TELSSVVCPSLAYSNTLFFKSAYNVQVVVEDNEPEERLLNRFRREVMRAGVIQECKRRRF 118

Query: 309 HENKQDXXXXXXXXXXXXXXXXXTPFRGGPQDRVETPKSSKKEEDEDNWE 160
           HENKQ+                    RG  Q++ E   S K ++D+DNWE
Sbjct: 119 HENKQEEKKRKVREAHKRNRRRRPQMRGPFQNKPEASPSKKNDDDDDNWE 168


>ref|XP_004145671.1| PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus]
           gi|449523367|ref|XP_004168695.1| PREDICTED:
           uncharacterized protein LOC101228071 [Cucumis sativus]
          Length = 183

 Score =  129 bits (324), Expect = 7e-28
 Identities = 64/109 (58%), Positives = 78/109 (71%)
 Frame = -3

Query: 486 ELMSVVCPSLAYANTLFFRSGYNVQVIVDDNEPEEKLLNRFRREVMRAGIIQESKRRKFH 307
           EL SV+CPSLAYANT+FFRS YNVQV+VDDNEPEE+LLNRFRREVMRAG+IQE KRR+F 
Sbjct: 67  ELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFF 126

Query: 306 ENKQDXXXXXXXXXXXXXXXXXTPFRGGPQDRVETPKSSKKEEDEDNWE 160
           EN QD                    R  PQ++ + P ++K+E D+DNW+
Sbjct: 127 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVP-ATKQEADDDNWD 174


>ref|XP_002268728.1| PREDICTED: uncharacterized protein LOC100241260 [Vitis vinifera]
          Length = 188

 Score =  129 bits (324), Expect = 7e-28
 Identities = 66/111 (59%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
 Frame = -3

Query: 489 TELMSVVCPSLAYANTLFFRSGYNVQVIVDDNEPEEKLLNRFRREVMRAGIIQESKRRKF 310
           ++LM+VVCPSLAY+NTLFF+S YNVQVIV+DNEPEEKLLNRFRREVMRAG+IQE KRR+F
Sbjct: 70  SDLMAVVCPSLAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRF 129

Query: 309 HENKQDXXXXXXXXXXXXXXXXXTPFRGGPQD-RVETPKSSKKEEDEDNWE 160
            ENKQD                    R   QD + E  K+ K +++EDNWE
Sbjct: 130 FENKQDEKKRKTREAAKRNRRRRPQSRFSTQDSKQEGSKNKKDDDEEDNWE 180


>emb|CAN82190.1| hypothetical protein VITISV_031115 [Vitis vinifera]
          Length = 188

 Score =  129 bits (324), Expect = 7e-28
 Identities = 66/111 (59%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
 Frame = -3

Query: 489 TELMSVVCPSLAYANTLFFRSGYNVQVIVDDNEPEEKLLNRFRREVMRAGIIQESKRRKF 310
           ++LM+VVCPSLAY+NTLFF+S YNVQVIV+DNEPEEKLLNRFRREVMRAG+IQE KRR+F
Sbjct: 70  SDLMAVVCPSLAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRF 129

Query: 309 HENKQDXXXXXXXXXXXXXXXXXTPFRGGPQD-RVETPKSSKKEEDEDNWE 160
            ENKQD                    R   QD + E  K+ K +++EDNWE
Sbjct: 130 FENKQDEKKRKTREAAKRNRRRRPQSRFSTQDSKQEGSKNKKDDDEEDNWE 180


>pdb|3BBN|U Chain U, Homology Model For The Spinach Chloroplast 30s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome.
           gi|17154781|gb|AAL35983.1|AF104396_1 ribosome-like
           protein [Cucumis sativus]
          Length = 190

 Score =  129 bits (324), Expect = 7e-28
 Identities = 64/109 (58%), Positives = 78/109 (71%)
 Frame = -3

Query: 486 ELMSVVCPSLAYANTLFFRSGYNVQVIVDDNEPEEKLLNRFRREVMRAGIIQESKRRKFH 307
           EL SV+CPSLAYANT+FFRS YNVQV+VDDNEPEE+LLNRFRREVMRAG+IQE KRR+F 
Sbjct: 74  ELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFF 133

Query: 306 ENKQDXXXXXXXXXXXXXXXXXTPFRGGPQDRVETPKSSKKEEDEDNWE 160
           EN QD                    R  PQ++ + P ++K+E D+DNW+
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVP-ATKQEADDDNWD 181


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