BLASTX nr result

ID: Panax21_contig00005704 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005704
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG80685.1| ribosomal protein L32 [Populus alba]                  114   6e-24
ref|XP_002316112.1| predicted protein [Populus trichocarpa] gi|2...   112   2e-23
ref|XP_002522475.1| conserved hypothetical protein [Ricinus comm...   107   1e-21
ref|XP_002311319.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
gb|ADR71288.1| 50S ribosomal protein L32pA [Hevea brasiliensis]       104   9e-21

>dbj|BAG80685.1| ribosomal protein L32 [Populus alba]
          Length = 138

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 5/102 (4%)
 Frame = -2

Query: 291 EGNTGCSPLVLVRWTHSIVKPSPLDSVFSNTVVSPQFVLPESDRSSDTN----GFGFSCL 124
           EGN GC  L + +WTH +    PLD    +++ +PQF LPE D + DT+     FGF+  
Sbjct: 13  EGNNGCR-LGIRKWTHVVAMAPPLDGALESSIAAPQFTLPEFDANQDTSKNSSDFGFTFP 71

Query: 123 PFG-GGSMELMAVPRKKVSRHKRGIRNGPKALKPVPVIIRCK 1
            F  GGSMELMAVP++KV+ HKRGIRNGPKALKP+PVIIRCK
Sbjct: 72  GFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCK 113


>ref|XP_002316112.1| predicted protein [Populus trichocarpa]
           gi|224112197|ref|XP_002316116.1| predicted protein
           [Populus trichocarpa] gi|222865152|gb|EEF02283.1|
           predicted protein [Populus trichocarpa]
           gi|222865156|gb|EEF02287.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score =  112 bits (281), Expect = 2e-23
 Identities = 58/102 (56%), Positives = 70/102 (68%), Gaps = 5/102 (4%)
 Frame = -2

Query: 291 EGNTGCSPLVLVRWTHSIVKPSPLDSVFSNTVVSPQFVLPESDRSSDTNG----FGFSCL 124
           E N GC  L + +WTH +    PLD    +++ SPQF LPE D + DT+     FGF+  
Sbjct: 13  EANNGCR-LGIRKWTHVVAMAPPLDGALESSIASPQFTLPEFDANQDTSNNSSDFGFTFP 71

Query: 123 PFG-GGSMELMAVPRKKVSRHKRGIRNGPKALKPVPVIIRCK 1
            F  GGSMELMAVP++KV+ HKRGIRNGPKALKP PVIIRCK
Sbjct: 72  GFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPTPVIIRCK 113


>ref|XP_002522475.1| conserved hypothetical protein [Ricinus communis]
           gi|223538360|gb|EEF39967.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 140

 Score =  107 bits (267), Expect = 1e-21
 Identities = 59/104 (56%), Positives = 67/104 (64%), Gaps = 8/104 (7%)
 Frame = -2

Query: 288 GNTGCSPLVLVRWTHSIVKPSPLDSVFSNTVVSPQFVLPE------SDRSSDTNGFGFSC 127
           GN G + L  +RWTH    P PLD   +N +  PQ VLPE      +  SS  N   F  
Sbjct: 13  GNNGYT-LGFLRWTHVAAMPPPLDGSINNAIAPPQMVLPEFNPNHDNSNSSYDNNLEFGF 71

Query: 126 LPFG--GGSMELMAVPRKKVSRHKRGIRNGPKALKPVPVIIRCK 1
           LP    GGSM+LMAVP+KKVSRHKRGIRNGPKALKP PVIIRC+
Sbjct: 72  LPSFSFGGSMDLMAVPKKKVSRHKRGIRNGPKALKPTPVIIRCR 115


>ref|XP_002311319.1| predicted protein [Populus trichocarpa] gi|222851139|gb|EEE88686.1|
           predicted protein [Populus trichocarpa]
          Length = 138

 Score =  106 bits (264), Expect = 2e-21
 Identities = 56/102 (54%), Positives = 66/102 (64%), Gaps = 6/102 (5%)
 Frame = -2

Query: 288 GNTGCSPLVLVRWTHSIVKPSPLDSVFSNTVVSPQFVLPESDRSSDTN------GFGFSC 127
           GN+GC   +  RW H      PLD    + + SPQ  LPE D + DT+      GFG   
Sbjct: 14  GNSGCRSGIR-RWAHVPAMARPLDGALESYIASPQLTLPELDANQDTSSNSSNSGFGLPG 72

Query: 126 LPFGGGSMELMAVPRKKVSRHKRGIRNGPKALKPVPVIIRCK 1
             FGG SMELMAVP++KV+ HKRGIRNGPKALKP+PVIIRCK
Sbjct: 73  FSFGG-SMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCK 113


>gb|ADR71288.1| 50S ribosomal protein L32pA [Hevea brasiliensis]
          Length = 139

 Score =  104 bits (259), Expect = 9e-21
 Identities = 57/104 (54%), Positives = 64/104 (61%), Gaps = 8/104 (7%)
 Frame = -2

Query: 288 GNTGCSPLVLVRWTHSIVKPSPLDSVFSNTVVSPQFVLPESDRSSDTNG--------FGF 133
           G  GC+ L L+RW H    PSPLD     T   P  VLPE D + D           FGF
Sbjct: 13  GKYGCT-LSLLRWAHIASMPSPLDGSLQRTTAPPDMVLPEFDTNPDNVNSSYRNNLEFGF 71

Query: 132 SCLPFGGGSMELMAVPRKKVSRHKRGIRNGPKALKPVPVIIRCK 1
               FGG S+E+MAVP+KKVS HKRGIRNGPKALKP PVIIRC+
Sbjct: 72  PSFSFGG-SIEVMAVPKKKVSPHKRGIRNGPKALKPTPVIIRCR 114


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