BLASTX nr result

ID: Panax21_contig00005504 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005504
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328174.1| predicted protein [Populus trichocarpa] gi|2...    73   5e-27
emb|CAN68722.1| hypothetical protein VITISV_033681 [Vitis vinifera]    75   2e-25
emb|CBI17078.3| unnamed protein product [Vitis vinifera]               75   2e-25
ref|XP_002270787.2| PREDICTED: uncharacterized protein LOC100255...    75   2e-25
ref|XP_004145785.1| PREDICTED: uncharacterized protein LOC101205...    73   5e-24

>ref|XP_002328174.1| predicted protein [Populus trichocarpa] gi|222837689|gb|EEE76054.1|
           predicted protein [Populus trichocarpa]
          Length = 518

 Score = 73.2 bits (178), Expect(2) = 5e-27
 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
 Frame = -2

Query: 379 SVTPP----LFRHDPLSLLRT-NPKNCISIKESANGSFIIRSSSSLQVLLDEVSSEERET 215
           SV+PP    L  H   SL+   N +   +++ S        SSSS+Q  ++E +S E+  
Sbjct: 3   SVSPPPSLPLLHHHNRSLIHHGNHRLLFTVRSS--------SSSSIQEAVEEKTSNEKNL 54

Query: 214 FSSELRDSTPFSTIKATKRIVLVRHGQSTWNEEG 113
            SSEL  +TPF +IKA KR++LVRHGQSTWNEEG
Sbjct: 55  LSSELYSTTPFPSIKAAKRVILVRHGQSTWNEEG 88



 Score = 72.8 bits (177), Expect(2) = 5e-27
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -3

Query: 138 GRAHGTRKGRIQGSSNFSVLTQKGESQAETSRQMLIDDSFDICFS 4
           G++    +GRIQGSS+FSVLT+KGE+QAETSRQMLIDDSFD+CFS
Sbjct: 80  GQSTWNEEGRIQGSSDFSVLTKKGEAQAETSRQMLIDDSFDVCFS 124


>emb|CAN68722.1| hypothetical protein VITISV_033681 [Vitis vinifera]
          Length = 1073

 Score = 74.7 bits (182), Expect(2) = 2e-25
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -3

Query: 138 GRAHGTRKGRIQGSSNFSVLTQKGESQAETSRQMLIDDSFDICFS 4
           G++    +GRIQGSSNFSVLTQKGE+QAETSRQML+DD+FD+CFS
Sbjct: 286 GQSTWNEEGRIQGSSNFSVLTQKGEAQAETSRQMLVDDAFDVCFS 330



 Score = 66.2 bits (160), Expect(2) = 2e-25
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 SFIIRSSSSLQVLLDEV-SSEERETFSSELRDSTPFSTIKATKRIVLVRHGQSTWNEEG 113
           S  +RSSSSLQ + +    S+E+   SS+L  STPF  IK  KR+VLVRHGQSTWNEEG
Sbjct: 236 SITVRSSSSLQEIHESTPESKEQGGLSSQLYASTPFPPIKVAKRVVLVRHGQSTWNEEG 294


>emb|CBI17078.3| unnamed protein product [Vitis vinifera]
          Length = 529

 Score = 74.7 bits (182), Expect(2) = 2e-25
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -3

Query: 138 GRAHGTRKGRIQGSSNFSVLTQKGESQAETSRQMLIDDSFDICFS 4
           G++    +GRIQGSSNFSVLTQKGE+QAETSRQML+DD+FD+CFS
Sbjct: 94  GQSTWNEEGRIQGSSNFSVLTQKGEAQAETSRQMLVDDAFDVCFS 138



 Score = 66.2 bits (160), Expect(2) = 2e-25
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 SFIIRSSSSLQVLLDEV-SSEERETFSSELRDSTPFSTIKATKRIVLVRHGQSTWNEEG 113
           S  +RSSSSLQ + +    S+E+   SS+L  STPF  IK  KR+VLVRHGQSTWNEEG
Sbjct: 44  SITVRSSSSLQEIHESTPESKEQGGLSSQLYASTPFPPIKVAKRVVLVRHGQSTWNEEG 102


>ref|XP_002270787.2| PREDICTED: uncharacterized protein LOC100255054 [Vitis vinifera]
          Length = 509

 Score = 74.7 bits (182), Expect(2) = 2e-25
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -3

Query: 138 GRAHGTRKGRIQGSSNFSVLTQKGESQAETSRQMLIDDSFDICFS 4
           G++    +GRIQGSSNFSVLTQKGE+QAETSRQML+DD+FD+CFS
Sbjct: 74  GQSTWNEEGRIQGSSNFSVLTQKGEAQAETSRQMLVDDAFDVCFS 118



 Score = 66.2 bits (160), Expect(2) = 2e-25
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 SFIIRSSSSLQVLLDEV-SSEERETFSSELRDSTPFSTIKATKRIVLVRHGQSTWNEEG 113
           S  +RSSSSLQ + +    S+E+   SS+L  STPF  IK  KR+VLVRHGQSTWNEEG
Sbjct: 24  SITVRSSSSLQEIHESTPESKEQGGLSSQLYASTPFPPIKVAKRVVLVRHGQSTWNEEG 82


>ref|XP_004145785.1| PREDICTED: uncharacterized protein LOC101205520 [Cucumis sativus]
           gi|449496250|ref|XP_004160084.1| PREDICTED:
           uncharacterized LOC101205520 [Cucumis sativus]
          Length = 514

 Score = 73.2 bits (178), Expect(2) = 5e-24
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -3

Query: 138 GRAHGTRKGRIQGSSNFSVLTQKGESQAETSRQMLIDDSFDICFS 4
           G++    +GRIQGSSNFSVLT+KGE+QAETSRQMLIDD+FD+CFS
Sbjct: 79  GQSTWNAEGRIQGSSNFSVLTKKGEAQAETSRQMLIDDAFDVCFS 123



 Score = 62.8 bits (151), Expect(2) = 5e-24
 Identities = 35/59 (59%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = -2

Query: 286 SFIIRSSSSLQ-VLLDEVSSEERETFSSELRDSTPFSTIKATKRIVLVRHGQSTWNEEG 113
           SF +RSSSSLQ V     SS + +  SSEL  S P   IK+ KR+VLVRHGQSTWN EG
Sbjct: 29  SFTVRSSSSLQEVEKSSESSPDGKDLSSELYASVPLPPIKSAKRVVLVRHGQSTWNAEG 87


Top