BLASTX nr result

ID: Panax21_contig00005470 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005470
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243...    68   1e-09
gb|ABB29919.1| unknown [Solanum tuberosum]                             60   3e-07
ref|XP_002531488.1| serine/arginine rich splicing factor, putati...    57   3e-06
ref|XP_003524737.1| PREDICTED: uncharacterized protein LOC100804...    56   5e-06

>ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243776 [Vitis vinifera]
           gi|302141951|emb|CBI19154.3| unnamed protein product
           [Vitis vinifera]
          Length = 257

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/44 (72%), Positives = 34/44 (77%)
 Frame = -1

Query: 620 PPSRGRSPDGRDHKERSPVPQSVSPRNRAADSRTPSPRNSDADE 489
           PPSR  SP GR   ERSP P+SVSPR R ADSR+PSP NSDADE
Sbjct: 214 PPSREESPVGRKRNERSPTPKSVSPRGRPADSRSPSPHNSDADE 257


>gb|ABB29919.1| unknown [Solanum tuberosum]
          Length = 258

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = -1

Query: 617 PSRGRSPDGRDHKERSPVPQSVSPRNRAADSRTPSPRNSDADE 489
           P R  SPDGR+HK+RSP P+S+SPR R A SR+P PR SDAD+
Sbjct: 217 PPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPR-SDADD 258


>ref|XP_002531488.1| serine/arginine rich splicing factor, putative [Ricinus communis]
           gi|223528897|gb|EEF30895.1| serine/arginine rich
           splicing factor, putative [Ricinus communis]
          Length = 257

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = -1

Query: 617 PSRGRSPDGRDHKERSPVPQSVSPRNRAADSRTPSPRNSDADE 489
           P +G SPD R    RSP P+S SP  RA  SR+PSPRNSD DE
Sbjct: 215 PPKGASPDRRSRDGRSPTPRSASPHGRAPASRSPSPRNSDVDE 257


>ref|XP_003524737.1| PREDICTED: uncharacterized protein LOC100804370 [Glycine max]
          Length = 267

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -1

Query: 611 RGRSPDGRDHKERSPVPQSVSPRNRAADSRTPSPRNSDADE 489
           RG SP  R  +ERSP P+SVSPR R   SR+PSPRNS+ DE
Sbjct: 227 RGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE 267


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