BLASTX nr result

ID: Panax21_contig00005460 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005460
         (1866 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|2...    92   5e-16
emb|CBI16624.3| unnamed protein product [Vitis vinifera]               91   1e-15
ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265...    91   1e-15
ref|XP_002511630.1| structural constituent of nuclear pore, puta...    91   1e-15
emb|CAN81311.1| hypothetical protein VITISV_016403 [Vitis vinifera]    91   1e-15

>ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|222835317|gb|EEE73752.1|
           predicted protein [Populus trichocarpa]
          Length = 241

 Score = 92.0 bits (227), Expect = 5e-16
 Identities = 47/52 (90%), Positives = 51/52 (98%), Gaps = 1/52 (1%)
 Frame = -1

Query: 153 QSMEDEAERIYKDERG-LLDDEAASTRDAMYEQAEFIERELEQMTEQIKSII 1
           QS+E+EAERIYKDERG LLDDEAASTRDAMYEQAEFIERE+EQMTEQIKS+I
Sbjct: 123 QSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVI 174



 Score = 67.8 bits (164), Expect(2) = 4e-10
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = -3

Query: 364 PKLPSEITGKTVEEIIEEWNTELQGRTGKFRKQVIAI 254
           PKLPSEITGKTVEEII+EWN+ELQ RTGKFRKQ  AI
Sbjct: 37  PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAI 73



 Score = 24.6 bits (52), Expect(2) = 4e-10
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 491 PCFNFYSWNNFKYQFFCS 438
           PCFN  ++NNF  Q +CS
Sbjct: 4   PCFNCCTYNNF--QHYCS 19


>emb|CBI16624.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 90.5 bits (223), Expect = 1e-15
 Identities = 47/51 (92%), Positives = 50/51 (98%), Gaps = 1/51 (1%)
 Frame = -1

Query: 150 SMEDEAERIYKDERGLL-DDEAASTRDAMYEQAEFIERELEQMTEQIKSII 1
           S+E+EAERIYKDERGLL DDEAASTRDAMYEQAEFIERE+EQMTEQIKSII
Sbjct: 688 SIEEEAERIYKDERGLLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSII 738



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 46/106 (43%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = -3

Query: 562 SFCLSTKTPTTASASQPQPAA---LFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 392
           SF L TK+   AS+SQ Q      LFG                                 
Sbjct: 532 SFSLPTKSSAPASSSQAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSSLVVASSSGTNS 591

Query: 391 XXXXXXXXAPKLPSEITGKTVEEIIEEWNTELQGRTGKFRKQVIAI 254
                   APK+PSEITGKTVEEII+EWNTELQ RTGKFRKQ  AI
Sbjct: 592 TVTTAVAPAPKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAI 637


>ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265039 [Vitis vinifera]
          Length = 775

 Score = 90.5 bits (223), Expect = 1e-15
 Identities = 47/51 (92%), Positives = 50/51 (98%), Gaps = 1/51 (1%)
 Frame = -1

Query: 150 SMEDEAERIYKDERGLL-DDEAASTRDAMYEQAEFIERELEQMTEQIKSII 1
           S+E+EAERIYKDERGLL DDEAASTRDAMYEQAEFIERE+EQMTEQIKSII
Sbjct: 655 SIEEEAERIYKDERGLLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSII 705



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 46/106 (43%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = -3

Query: 562 SFCLSTKTPTTASASQPQPAA---LFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 392
           SF L TK+   AS+SQ Q      LFG                                 
Sbjct: 499 SFSLPTKSSAPASSSQAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSSLVVASSSGTNS 558

Query: 391 XXXXXXXXAPKLPSEITGKTVEEIIEEWNTELQGRTGKFRKQVIAI 254
                   APK+PSEITGKTVEEII+EWNTELQ RTGKFRKQ  AI
Sbjct: 559 TVTTAVAPAPKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAI 604


>ref|XP_002511630.1| structural constituent of nuclear pore, putative [Ricinus communis]
           gi|223548810|gb|EEF50299.1| structural constituent of
           nuclear pore, putative [Ricinus communis]
          Length = 811

 Score = 90.5 bits (223), Expect = 1e-15
 Identities = 46/52 (88%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
 Frame = -1

Query: 153 QSMEDEAERIYKDERGLL-DDEAASTRDAMYEQAEFIERELEQMTEQIKSII 1
           QSME+EAERIYKDERGLL DDEAASTRDAMYEQAE +ERELEQMT+QIKS+I
Sbjct: 690 QSMEEEAERIYKDERGLLLDDEAASTRDAMYEQAELVERELEQMTQQIKSVI 741



 Score = 67.4 bits (163), Expect = 1e-08
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = -3

Query: 364 PKLPSEITGKTVEEIIEEWNTELQGRTGKFRKQVIAI 254
           PKLPSEITGKTVEEII+EWN ELQ RTGKFRKQ  AI
Sbjct: 604 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQAAAI 640


>emb|CAN81311.1| hypothetical protein VITISV_016403 [Vitis vinifera]
          Length = 279

 Score = 90.5 bits (223), Expect = 1e-15
 Identities = 47/51 (92%), Positives = 50/51 (98%), Gaps = 1/51 (1%)
 Frame = -1

Query: 150 SMEDEAERIYKDERGLL-DDEAASTRDAMYEQAEFIERELEQMTEQIKSII 1
           S+E+EAERIYKDERGLL DDEAASTRDAMYEQAEFIERE+EQMTEQIKSII
Sbjct: 159 SIEEEAERIYKDERGLLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSII 209



 Score = 68.6 bits (166), Expect = 6e-09
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = -3

Query: 364 PKLPSEITGKTVEEIIEEWNTELQGRTGKFRKQVIAI 254
           PK+PSEITGKTVEEII+EWNTELQ RTGKFRKQ  AI
Sbjct: 35  PKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAI 71


Top