BLASTX nr result

ID: Panax21_contig00005424 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005424
         (1295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23698.3| unnamed protein product [Vitis vinifera]               76   2e-11
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,...    72   4e-10

>emb|CBI23698.3| unnamed protein product [Vitis vinifera]
          Length = 388

 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 44/67 (65%), Positives = 51/67 (76%)
 Frame = +1

Query: 253 LVESYNLVVGATWEVAMVMLMVIQDMEIKDGDLTPHKLLGIMGLRPVDLMVGKLDMVVGM 432
           LV SY  VV ATWEVAMVMLM IQDME++ G+L  H+LL IM LR + LMVGKL MVV  
Sbjct: 301 LVMSYRGVVVATWEVAMVMLMGIQDMEMQHGNLIHHRLLEIMELRQMVLMVGKLAMVVD- 359

Query: 433 VVLRPDR 453
           +VL PD+
Sbjct: 360 IVLSPDK 366


>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
           communis] gi|223532245|gb|EEF34049.1| Heterogeneous
           nuclear ribonucleoprotein 27C, putative [Ricinus
           communis]
          Length = 470

 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 50/158 (31%), Positives = 56/158 (35%), Gaps = 4/158 (2%)
 Frame = +3

Query: 3   SAYGTQASSGYGTMGYGNTP-WXXXXXXXXXXXXXXPVS---APTXXXXXXXXXXXXXXX 170
           S++ +QA SGYG MGYGN   W              P     + +               
Sbjct: 313 SSWSSQAPSGYGAMGYGNAASWGANTGAGSGGPGSAPAGQSPSGSAGYGNQGYGYGSYGG 372

Query: 171 XXXXXXNPAAYGAVGGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGYGNQGWRS 350
                 NPA Y AVGGR                                N GYG  GWRS
Sbjct: 373 NDGSYGNPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGNPGYGTAGWRS 432

Query: 351 DPSQASGNYGAQASXXXXXXXXXXXXXXXAPTRQGQQQ 464
           DPSQASGNYG QA+               A  RQGQQQ
Sbjct: 433 DPSQASGNYGTQANGPHGAQVGYGGGYGGAQARQGQQQ 470


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