BLASTX nr result
ID: Panax21_contig00005365
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00005365
(532 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory pr... 305 2e-81
emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera] 305 2e-81
ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, put... 301 4e-80
ref|XP_002307213.1| predicted protein [Populus trichocarpa] gi|2... 298 3e-79
ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleop... 286 1e-75
>ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 305 bits (782), Expect = 2e-81
Identities = 146/177 (82%), Positives = 160/177 (90%)
Frame = -1
Query: 532 GFQPYGYGSGFQISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDVLLVNKNGRFSGEAFV 353
GFQPYGYGSGFQ FPVVRLRG+PF+CTDIDIFKFF GLDIVDVLLVNK+GRFSGEA+V
Sbjct: 42 GFQPYGYGSGFQPPTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYV 101
Query: 352 VFAGAMQADVALQRDRQNIGRRYVEVFRCKKQEYYNAVASEVNYEGINDNDFRGSPPPVR 173
VFAG+MQAD ALQRDRQN+GRRYVEVFRCKKQ+YY+AVASEVNYEGI DNDF GSPPP R
Sbjct: 102 VFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSR 161
Query: 172 PKRFQGKDQMEYTEILKLRGLPFSTKKSNIVQFFKDYKLVDDNIHIACRADGKATGE 2
KRF KDQME+TEILKLRGLPFS KKS I++FF D++L DD +HIACR DGKATGE
Sbjct: 162 SKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGE 218
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = -1
Query: 499 QISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDV---LLVNKNGRFSGEAFVVFAGAMQA 329
Q+ +++LRG+PF I +FF ++ D + +G+ +GEA+V FA A +A
Sbjct: 170 QMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEA 229
Query: 328 DVALQRDRQNIGRRYVEVF 272
A+ +D+ IG RYVE+F
Sbjct: 230 KKAMGKDKMTIGSRYVELF 248
>emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 305 bits (782), Expect = 2e-81
Identities = 146/177 (82%), Positives = 160/177 (90%)
Frame = -1
Query: 532 GFQPYGYGSGFQISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDVLLVNKNGRFSGEAFV 353
GFQPYGYGSGFQ FPVVRLRG+PF+CTDIDIFKFF GLDIVDVLLVNK+GRFSGEA+V
Sbjct: 35 GFQPYGYGSGFQPPTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYV 94
Query: 352 VFAGAMQADVALQRDRQNIGRRYVEVFRCKKQEYYNAVASEVNYEGINDNDFRGSPPPVR 173
VFAG+MQAD ALQRDRQN+GRRYVEVFRCKKQ+YY+AVASEVNYEGI DNDF GSPPP R
Sbjct: 95 VFAGSMQADFALQRDRQNMGRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSR 154
Query: 172 PKRFQGKDQMEYTEILKLRGLPFSTKKSNIVQFFKDYKLVDDNIHIACRADGKATGE 2
KRF KDQME+TEILKLRGLPFS KKS I++FF D++L DD +HIACR DGKATGE
Sbjct: 155 SKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGE 211
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = -1
Query: 499 QISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDV---LLVNKNGRFSGEAFVVFAGAMQA 329
Q+ +++LRG+PF I +FF ++ D + +G+ +GEA+V FA A +A
Sbjct: 163 QMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEA 222
Query: 328 DVALQRDRQNIGRRYVEVF 272
A+ +D+ IG RYVE+F
Sbjct: 223 KKAMGKDKMTIGSRYVELF 241
>ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis] gi|223539109|gb|EEF40705.1| heterogeneous
nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 264
Score = 301 bits (771), Expect = 4e-80
Identities = 140/177 (79%), Positives = 159/177 (89%)
Frame = -1
Query: 532 GFQPYGYGSGFQISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDVLLVNKNGRFSGEAFV 353
GFQPYGYG GFQ + FPVVRLRG+PF+CTDIDIFKFF GLDIVDVLLVNKNGRF+GEAFV
Sbjct: 42 GFQPYGYGGGFQSAPFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFV 101
Query: 352 VFAGAMQADVALQRDRQNIGRRYVEVFRCKKQEYYNAVASEVNYEGINDNDFRGSPPPVR 173
VFAGAMQ + ALQRDRQN+GRRYVEVFRCK+Q+YYNAVA+EVNYEGI D D+ GSPPP +
Sbjct: 102 VFAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPPSK 161
Query: 172 PKRFQGKDQMEYTEILKLRGLPFSTKKSNIVQFFKDYKLVDDNIHIACRADGKATGE 2
KRF KDQ+EYTEILK+RGLPFS KK I++FFK+++LV+D IHIACR DGKATGE
Sbjct: 162 AKRFSDKDQLEYTEILKMRGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGE 218
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = -1
Query: 499 QISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDV---LLVNKNGRFSGEAFVVFAGAMQA 329
Q+ ++++RG+PF +I +FF ++V+ + +G+ +GEA+V FA A +A
Sbjct: 170 QLEYTEILKMRGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEA 229
Query: 328 DVALQRDRQNIGRRYVEVF 272
A+ +D+ IG RYVE+F
Sbjct: 230 KRAMSKDKMTIGSRYVELF 248
>ref|XP_002307213.1| predicted protein [Populus trichocarpa] gi|222856662|gb|EEE94209.1|
predicted protein [Populus trichocarpa]
Length = 257
Score = 298 bits (764), Expect = 3e-79
Identities = 138/177 (77%), Positives = 158/177 (89%)
Frame = -1
Query: 532 GFQPYGYGSGFQISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDVLLVNKNGRFSGEAFV 353
GFQPYGYG GFQ FPVVRLRG+PF+C+D++I KFF GLDIVDVLLVNK+GRF+GEAFV
Sbjct: 35 GFQPYGYGGGFQPPPFPVVRLRGLPFNCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAFV 94
Query: 352 VFAGAMQADVALQRDRQNIGRRYVEVFRCKKQEYYNAVASEVNYEGINDNDFRGSPPPVR 173
VFAG MQ + ALQRDRQN+GRRYVEVFRCK+Q+YYNAVA+EVNYEGI DND+ GSPPP R
Sbjct: 95 VFAGPMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPSR 154
Query: 172 PKRFQGKDQMEYTEILKLRGLPFSTKKSNIVQFFKDYKLVDDNIHIACRADGKATGE 2
KRF KDQMEYTEILK+RGLPFS KK+ I++FFKD+KL+D+ IHIACR DGKATGE
Sbjct: 155 AKRFSDKDQMEYTEILKMRGLPFSAKKAEIIEFFKDFKLIDERIHIACRPDGKATGE 211
Score = 56.2 bits (134), Expect = 3e-06
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = -1
Query: 499 QISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDV---LLVNKNGRFSGEAFVVFAGAMQA 329
Q+ ++++RG+PF +I +FF ++D + +G+ +GEA+V F A +A
Sbjct: 163 QMEYTEILKMRGLPFSAKKAEIIEFFKDFKLIDERIHIACRPDGKATGEAYVEFISAEEA 222
Query: 328 DVALQRDRQNIGRRYVEVFRCKKQE 254
A+ +D+ IG RYVE+F + E
Sbjct: 223 KRAMSKDKMTIGSRYVELFPSTQDE 247
>ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 286 bits (732), Expect = 1e-75
Identities = 138/178 (77%), Positives = 152/178 (85%), Gaps = 1/178 (0%)
Frame = -1
Query: 532 GFQPYGYGSGFQISAFPVVRLRGIPFDCTDIDIFKFFDGLDIVDVLLVNKNGRFSGEAFV 353
G PYGY GFQ FPVVRLRG+PF+CTDIDI KFF GL IVDVLLVNK+GRFSGEAFV
Sbjct: 34 GNLPYGYAGGFQPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFV 93
Query: 352 VFAGAMQADVALQRDRQNIGRRYVEVFRCKKQEYYNAVASEVNYEGINDNDFRG-SPPPV 176
VFAGAMQ + ALQRDRQN+GRRYVEVFRCKKQ+YYNAVA E+NYEGI DND+ G SPPP
Sbjct: 94 VFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDNDYHGSSPPPS 153
Query: 175 RPKRFQGKDQMEYTEILKLRGLPFSTKKSNIVQFFKDYKLVDDNIHIACRADGKATGE 2
R KRF KDQMEYTEILK+RGLPF KS IV+FFKD+KL++D +HIACR DGKATGE
Sbjct: 154 RLKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKATGE 211